Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.3e-63 245.4 122 100.0
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.7e-62 240.7 122 98.4
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.1e-19 99.4 104 44.2
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.3e-18 95.9 98 44.9
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 5.1e-18 94.7 100 43.0
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 6.6e-18 94.4 100 44.0
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 6.6e-18 94.4 100 43.0
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 8.7e-18 94.0 98 43.9
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.5e-17 93.2 100 44.0
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.9e-17 92.8 100 42.0
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 2.5e-17 92.4 100 42.0
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 4.3e-17 91.7 100 43.0
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 5.6e-17 91.3 100 41.0
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 5.6e-17 91.3 86 50.0
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 7.3e-17 90.9 100 43.0
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 7.3e-17 90.9 121 34.7
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 7.3e-17 90.9 121 34.7
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 7.3e-17 90.9 99 43.4
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.3e-16 90.1 86 50.0
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.3e-16 90.1 118 37.3
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 1.3e-16 90.1 100 41.0
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 1.6e-16 89.7 118 36.4
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.6e-16 89.7 100 42.0
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.6e-16 89.7 103 39.8
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 1.6e-16 89.7 100 42.0
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 2.1e-16 89.4 118 37.3
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 2.8e-16 89.0 118 37.3
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.8e-16 89.0 118 36.4
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 3.6e-16 88.6 100 40.0
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.6e-16 88.6 86 45.3
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 4.8e-16 88.2 118 34.7
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 4.8e-16 88.2 86 43.0
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 4.8e-16 88.2 86 46.5
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.8e-16 88.2 100 41.0
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 4.8e-16 88.2 101 41.6
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 4.8e-16 88.2 86 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 6.2e-16 87.8 102 38.2
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 6.2e-16 87.8 118 34.7
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 6.2e-16 87.8 100 40.0
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 6.2e-16 87.8 100 40.0
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 8.1e-16 87.4 100 40.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 1.1e-15 87.0 118 33.1
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.1e-15 87.0 86 45.3
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.1e-15 87.0 86 45.3
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.1e-15 87.0 98 40.8
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.4e-15 86.7 86 45.3
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.4e-15 86.7 119 37.8
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.4e-15 86.7 118 37.3
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 1.4e-15 86.7 100 40.0
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 1.4e-15 86.7 86 45.3
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 1.4e-15 86.7 100 41.0
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.8e-15 86.3 100 41.0
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 1.8e-15 86.3 100 40.0
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.8e-15 86.3 100 40.0
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 1.8e-15 86.3 100 40.0
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 1.8e-15 86.3 86 44.2
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.8e-15 86.3 100 41.0
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 2.4e-15 85.9 100 40.0
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.4e-15 85.9 100 39.0
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.4e-15 85.9 100 39.0
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 2.4e-15 85.9 101 40.6
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 2.4e-15 85.9 100 41.0
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.4e-15 85.9 118 33.9
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 3.1e-15 85.5 86 44.2
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 3.1e-15 85.5 100 40.0
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 3.1e-15 85.5 100 39.0
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 4.0e-15 85.1 100 38.0
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 4.0e-15 85.1 98 41.8
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 4.0e-15 85.1 100 38.0
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 4.0e-15 85.1 118 33.1
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 4.0e-15 85.1 100 40.0
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 4.0e-15 85.1 120 36.7
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.0e-15 85.1 95 41.1
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 5.3e-15 84.7 100 40.0
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 5.3e-15 84.7 98 37.8
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.3e-15 84.7 119 37.8
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 5.3e-15 84.7 118 37.3
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 5.3e-15 84.7 100 39.0
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.3e-15 84.7 100 38.0
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 5.3e-15 84.7 100 38.0
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 5.3e-15 84.7 86 43.0
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 5.3e-15 84.7 118 31.4
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 5.3e-15 84.7 86 44.2
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.3e-15 84.7 86 43.0
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 5.3e-15 84.7 118 35.6
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 5.3e-15 84.7 86 44.2
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 6.9e-15 84.3 100 40.0
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 6.9e-15 84.3 100 40.0
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 6.9e-15 84.3 100 40.0
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 6.9e-15 84.3 86 44.2
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 6.9e-15 84.3 100 39.0
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 6.9e-15 84.3 86 41.9
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 9.0e-15 84.0 118 34.7
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 9.0e-15 84.0 98 40.8
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 9.0e-15 84.0 98 40.8
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 9.0e-15 84.0 100 36.0
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 9.0e-15 84.0 100 36.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 9.0e-15 84.0 86 43.0
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.2e-14 83.6 98 41.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-14 83.6 100 36.0
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 1.2e-14 83.6 86 44.2
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 1.2e-14 83.6 100 39.0
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.2e-14 83.6 101 39.6
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.2e-14 83.6 86 46.5
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.5e-14 83.2 86 45.3
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.5e-14 83.2 87 41.4
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 1.5e-14 83.2 100 36.0
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 2.0e-14 82.8 119 35.3
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 2.0e-14 82.8 86 44.2
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 2.0e-14 82.8 86 44.2
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 2.6e-14 82.4 118 33.1
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 2.6e-14 82.4 100 40.0
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 2.6e-14 82.4 86 40.7
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.6e-14 82.4 101 38.6
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 2.6e-14 82.4 86 41.9
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 3.4e-14 82.0 98 38.8
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 3.4e-14 82.0 86 45.3
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 4.5e-14 81.6 86 43.0
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 4.5e-14 81.6 86 40.7
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 4.5e-14 81.6 86 40.7
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 4.5e-14 81.6 118 35.6
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 5.8e-14 81.3 86 41.9
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 5.8e-14 81.3 118 34.7
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 5.8e-14 81.3 86 40.7
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 5.8e-14 81.3 86 44.2
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 7.6e-14 80.9 86 41.9
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 7.6e-14 80.9 100 42.0
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 7.6e-14 80.9 86 40.7
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 7.6e-14 80.9 87 41.4
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 9.9e-14 80.5 100 36.0
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 9.9e-14 80.5 100 36.0
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 9.9e-14 80.5 100 36.0
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 9.9e-14 80.5 86 40.7
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 9.9e-14 80.5 98 39.8
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.3e-13 80.1 86 39.5
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-13 80.1 100 36.0
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 1.3e-13 80.1 86 40.7
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 1.3e-13 80.1 86 40.7
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.3e-13 80.1 86 40.7
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.7e-13 79.7 100 39.0
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 1.7e-13 79.7 118 31.4
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 1.7e-13 79.7 86 40.7
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 1.7e-13 79.7 121 36.4
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.2e-13 79.3 118 33.1
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.2e-13 79.3 86 39.5
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 39.0
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 2.2e-13 79.3 100 36.0
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 3.8e-13 78.6 101 37.6
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 4.9e-13 78.2 86 40.7
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 4.9e-13 78.2 87 40.2
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 4.9e-13 78.2 86 39.5
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 8.4e-13 77.4 100 35.0
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-12 77.0 101 34.7
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.1e-12 77.0 93 38.7
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-12 76.6 101 36.6
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-12 76.6 89 39.3
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 1.9e-12 76.3 87 41.4
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.9e-12 76.3 101 35.6
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-12 75.9 101 35.6
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 7.1e-12 74.3 87 37.9
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 9.3e-12 73.9 99 36.4
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.6e-11 73.2 87 37.9
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.6e-11 71.6 101 35.6
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.3e-10 70.1 121 31.4
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 7.4e-09 64.3 98 38.8
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.6e-08 63.2 98 31.6
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 2.8e-08 62.4 84 38.1


User provided reference genes

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