Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 1.1e-40 169.5 84 100.0
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 6.0e-26 120.6 83 73.5
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 3.1e-22 108.2 78 69.2
Solyc00g210860.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.3e-17 92.8 82 57.3
Solyc08g036550.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.3e-17 92.8 82 57.3
Nitab4.5_0010736g0020 Nicotiana tabacum HOM05D017454 ORTHO05D009928 2.8e-15 85.1 84 53.6
Peaxi162Scf01132g00318 Petunia axillaris HOM05D017454 ORTHO05D009928 2.0e-13 79.0 73 56.2
ATR0752G114 Amborella trichopoda HOM05D017454 ORTHO05D009928 6.4e-12 73.9 43 81.4
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 1.1e-11 73.2 84 45.2
Rhsim10G0009400 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.6e-10 69.3 50 74.0
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 1.0e-09 66.6 84 46.4
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 1.0e-09 66.6 84 46.4
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 1.0e-09 66.6 84 46.4
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 1.0e-09 66.6 84 46.4
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 3.9e-09 64.7 84 44.0
DCAR_022727 Daucus carota HOM05D010940 ORTHO05D009928 1.5e-08 62.8 84 41.7
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 1.9e-08 62.4 84 41.7
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 3.3e-08 61.6 84 41.7
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 3.3e-08 61.6 84 41.7
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 3.3e-08 61.6 84 41.7
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 3.3e-08 61.6 84 41.7
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 3.3e-08 61.6 70 45.7
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 3.3e-08 61.6 70 45.7
RcHm_v2.0_MTg0499231 Rosa chinensis HOM05D010940 ORTHO05D020245 9.6e-08 60.1 83 38.6
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.6e-07 58.2 84 42.9
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 3.6e-07 58.2 78 37.2
Sopen00g002760 Solanum pennellii HOM05D010940 ORTHO05D009928 1.1e-06 56.6 73 41.1
ECA039G0024 Erigeron canadensis HOM05D008490 ORTHO05D010725 1.4e-06 56.2 73 41.1
Lsat_1_v5_gn_0_38260 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-06 55.1 84 36.9
Lsat_1_v5_gn_6_64680 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-06 55.1 84 36.9
Lsat_1_v5_gn_8_11761 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-06 55.1 84 36.9
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 3.1e-06 55.1 80 37.5
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.0e-06 54.7 84 38.1
CSS0025600 Camellia sinensis var. sinensis HOM05D010940 ORTHO05D020245 9.0e-06 53.5 67 41.8
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.0e-06 53.5 87 42.5
Nitab4.5_0007225g0050 Nicotiana tabacum HOM05D017454 ORTHO05D009928 9.0e-06 53.5 51 56.9


User provided reference genes

Program Settings