Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0250G001 Amborella trichopoda HOM05D001772 ORTHO05D000476 1.1e-60 236.5 122 100.0
MBI10_g28842_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D000476 3.1e-15 85.5 103 51.5
arahy.Tifrunner.gnm1.ann1.6LLT9T Arachis hypogaea HOM05D001772 ORTHO05D000476 1.1e-12 77.0 99 50.5
arahy.Tifrunner.gnm1.ann1.Z5E7XJ Arachis hypogaea HOM05D001772 ORTHO05D000476 2.4e-12 75.9 99 50.5
Ca_08035_v3 Cicer arietinum L. HOM05D001772 ORTHO05D000476 2.7e-11 72.4 105 46.7
Medtr7g080890 Medicago truncatula HOM05D001772 ORTHO05D000476 3.5e-11 72.0 105 46.7
Potri.002G239800 Populus trichocarpa HOM05D001772 ORTHO05D000476 3.5e-11 72.0 99 46.5
Psat3g100920 Pisum sativum HOM05D001772 ORTHO05D000476 4.6e-11 71.6 105 46.7
Manes.12G055400 Manihot esculenta HOM05D001772 ORTHO05D000476 6.0e-11 71.2 101 48.5
Lj1g0002706 Lotus japonicus HOM05D001772 ORTHO05D000476 6.7e-10 67.8 105 47.6
TWI36G1769 Tripterygium wilfordii HOM05D001772 ORTHO05D000476 6.7e-10 67.8 98 45.9
Lalb_Chr03g0040551 Lupinus albus HOM05D001772 ORTHO05D000476 1.9e-09 66.2 99 45.5
Gohir.A08G048200 Gossypium hirsutum HOM05D001772 ORTHO05D000476 2.5e-09 65.9 104 49.0
Gorai.004G060200 Gossypium raimondii HOM05D001772 ORTHO05D000476 4.3e-09 65.1 98 49.0
FvH4_2g17470 Fragaria vesca HOM05D001772 ORTHO05D000476 5.6e-09 64.7 101 42.6
TPR.G35837 Trifolium pratense HOM05D001772 ORTHO05D000476 5.6e-09 64.7 99 43.4
MELO3C021127.2 Cucumis melo HOM05D001772 ORTHO05D000476 7.4e-09 64.3 101 48.5
GSVIVG01001530001 Vitis vinifera HOM05D001772 ORTHO05D000476 7.4e-09 64.3 101 48.5
TAR362G0313 Trochodendron aralioides HOM05D001772 ORTHO05D000476 1.3e-08 63.5 101 43.6
CAN.G311.18 Capsicum annuum HOM05D001772 ORTHO05D000476 2.1e-08 62.8 107 43.9
Gohir.D08G058300 Gossypium hirsutum HOM05D001772 ORTHO05D000476 2.1e-08 62.8 98 48.0
Nn7g37462 Nelumbo nucifera HOM05D001772 ORTHO05D000476 2.8e-08 62.4 101 45.5
RcHm_v2.0_Chr6g0282201 Rosa chinensis HOM05D001772 ORTHO05D000476 2.8e-08 62.4 101 43.6
Eucgr.K02359 Eucalyptus grandis HOM05D001772 ORTHO05D000476 4.8e-08 61.6 101 42.6
Solyc09g042770.4 Solanum lycopersicum HOM05D001772 ORTHO05D000476 4.8e-08 61.6 103 43.7
PGSC0003DMG400021910 Solanum tuberosum HOM05D001772 ORTHO05D000476 4.8e-08 61.6 103 44.7
Duzib133G1118 Durio zibethinus HOM05D001772 ORTHO05D000476 6.2e-08 61.2 106 43.4
Cc01_g15860 Coffea canephora HOM05D001772 ORTHO05D000476 8.1e-08 60.8 100 47.0
PGR044G1970 Punica granatum HOM05D001772 ORTHO05D000476 1.4e-07 60.1 106 43.4
Sed0023396 Sechium edule HOM05D001772 ORTHO05D000476 2.4e-07 59.3 98 46.9
MD10G1147900 Malus domestica HOM05D001772 ORTHO05D000476 3.1e-07 58.9 97 43.3
Migut.D00773 Erythranthe guttata HOM05D001772 ORTHO05D000476 5.3e-07 58.2 102 41.2
Sopen09g015820 Solanum pennellii HOM05D001772 ORTHO05D000476 5.3e-07 58.2 103 42.7
Os01g0889800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D000476 6.9e-07 57.8 106 42.5
Prupe.8G187000 Prunus persica HOM05D001772 ORTHO05D000476 6.9e-07 57.8 105 41.0
Thecc.01G207500 Theobroma cacao HOM05D001772 ORTHO05D000476 6.9e-07 57.8 107 44.9
MSTRG.18506 Avicennia marina HOM05D001772 ORTHO05D000476 1.2e-06 57.0 104 38.5
SGA_v2.0_scaffold8G04491 Striga asiatica HOM05D001772 ORTHO05D000476 1.5e-06 56.6 106 38.7
Actinidia23345 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.6e-06 55.8 103 44.7
HanXRQChr07g0190571 Helianthus annuus HOM05D001772 ORTHO05D000476 5.8e-06 54.7 98 39.8


User provided reference genes

Program Settings