Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0245G001 Amborella trichopoda HOM05D001332 ORTHO05D001894 2.0e-29 131.7 64 100.0
ATR0618G330 Amborella trichopoda HOM05D001332 ORTHO05D001894 2.0e-29 131.7 64 100.0
COL.COLO4_19099 Corchorus olitorius HOM05D001332 ORTHO05D001894 1.6e-15 85.5 64 64.1
Dinv28605 Davidia involucrata HOM05D001332 ORTHO05D001894 4.7e-15 84.0 64 59.4
Cfa011640 Carpinus fangiana HOM05D001332 ORTHO05D001894 8.0e-15 83.2 64 59.4
Gohir.A05G090600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 8.0e-15 83.2 64 60.9
Gorai.009G094100 Gossypium raimondii HOM05D001332 ORTHO05D001894 8.0e-15 83.2 64 60.9
QL01p027096 Quercus lobata HOM05D001332 ORTHO05D001894 8.0e-15 83.2 64 60.9
QL01p027139 Quercus lobata HOM05D001332 ORTHO05D001894 1.0e-14 82.8 64 59.4
Gohir.D03G118400 Gossypium hirsutum HOM05D001332 ORTHO05D001894 1.4e-14 82.4 64 59.4
Gorai.003G124800 Gossypium raimondii HOM05D001332 ORTHO05D001894 1.4e-14 82.4 64 59.4
Hund04895 Selenicereus undatus HOM05D001332 ORTHO05D001894 2.3e-14 81.6 64 57.8
Gohir.A03G048700 Gossypium hirsutum HOM05D001332 ORTHO05D001894 3.1e-14 81.3 64 57.8
Haze_24246 Corylus avellana HOM05D001332 ORTHO05D001894 4.0e-14 80.9 64 56.2
TWI75G1181 Tripterygium wilfordii HOM05D001332 ORTHO05D001894 5.2e-14 80.5 64 56.2
QL01p027101 Quercus lobata HOM05D001332 ORTHO05D001894 6.8e-14 80.1 65 61.5
QL93p0183_0037 Quercus lobata HOM05D001332 ORTHO05D001894 6.8e-14 80.1 65 61.5
Gohir.D05G091600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 8.9e-14 79.7 64 59.4
TAR623G1433 Trochodendron aralioides HOM05D001332 ORTHO05D001894 8.9e-14 79.7 64 57.8
Cpa.g.sc9.219 Carica papaya HOM05D001332 ORTHO05D001894 1.2e-13 79.3 64 54.7
Thecc.09G306600 Theobroma cacao HOM05D001332 ORTHO05D001894 1.5e-13 79.0 64 60.9
Duzib150G1063 Durio zibethinus HOM05D001332 ORTHO05D001894 2.0e-13 78.6 64 56.2
Gohir.D05G091500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.0e-13 78.6 64 59.4
CiPaw.13G082100 Carya illinoinensis HOM05D001332 ORTHO05D001894 2.6e-13 78.2 63 57.1
PGSC0003DMG400030434 Solanum tuberosum HOM05D001332 ORTHO05D001894 3.4e-13 77.8 64 57.8
DCAR_018943 Daucus carota HOM05D001332 ORTHO05D001894 4.4e-13 77.4 64 56.2
EL10Ac7g16116 Beta vulgaris HOM05D001332 ORTHO05D001894 5.8e-13 77.0 64 51.6
CAN.G394.100 Capsicum annuum HOM05D001332 ORTHO05D001894 5.8e-13 77.0 64 56.2
Solyc06g076690.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 7.5e-13 76.6 64 56.2
Sopen06g033080 Solanum pennellii HOM05D001332 ORTHO05D001894 7.5e-13 76.6 64 56.2
CDE04G0966 Ceratophyllum demersum HOM05D001332 ORTHO05D001894 9.8e-13 76.3 64 53.1
Peaxi162Scf01058g00147 Petunia axillaris HOM05D001332 ORTHO05D001894 9.8e-13 76.3 64 57.8
Gohir.A05G090500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 1.3e-12 75.9 64 56.2
Nitab4.5_0010287g0020 Nicotiana tabacum HOM05D001332 ORTHO05D001894 1.3e-12 75.9 64 54.7
MD11G1081500 Malus domestica HOM05D001332 ORTHO05D001894 1.7e-12 75.5 64 54.7
EL10Ac7g17954 Beta vulgaris HOM05D001332 ORTHO05D001894 2.2e-12 75.1 64 54.7
MBI14_g32945_MAGBIO Magnolia biondii HOM05D001332 ORTHO05D001894 2.2e-12 75.1 64 50.0
Manes.17G018900 Manihot esculenta HOM05D001332 ORTHO05D001894 2.2e-12 75.1 64 57.8
Peaxi162Scf01058g00149 Petunia axillaris HOM05D001332 ORTHO05D001894 2.2e-12 75.1 64 53.1
Prupe.6G061800 Prunus persica HOM05D001332 ORTHO05D001894 2.2e-12 75.1 64 56.2
Eucgr.J01944 Eucalyptus grandis HOM05D001332 ORTHO05D001894 2.9e-12 74.7 63 55.6
Hma1.2p1_0227F.1_g096210 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 4.9e-12 73.9 64 51.6
Nitab4.5_0000744g0150 Nicotiana tabacum HOM05D001332 ORTHO05D001894 4.9e-12 73.9 64 54.7
Sc12g0000970 Simmondsia chinensis HOM05D001332 ORTHO05D001894 8.3e-12 73.2 63 49.2
Actinidia25141 Actinidia chinensis HOM05D001332 ORTHO05D001894 1.1e-11 72.8 64 54.7
AUR62001693 Chenopodium quinoa HOM05D001332 ORTHO05D001894 1.1e-11 72.8 64 54.7
AUR62020089 Chenopodium quinoa HOM05D001332 ORTHO05D001894 1.1e-11 72.8 64 54.7
Nitab4.5_0000744g0160 Nicotiana tabacum HOM05D001332 ORTHO05D001894 1.1e-11 72.8 64 53.1
AUR62001697 Chenopodium quinoa HOM05D001332 ORTHO05D001894 1.4e-11 72.4 63 49.2
Cc01_g13790 Coffea canephora HOM05D001332 ORTHO05D001894 1.4e-11 72.4 63 54.0
Hma1.2p1_0227F.1_g096200 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 1.9e-11 72.0 64 53.1
CSS0016525 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 2.4e-11 71.6 64 51.6
CSS0035664 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 2.4e-11 71.6 64 51.6
AUR62020085 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.4e-11 71.6 63 49.2
Ciclev10029463m.g Citrus clementina HOM05D001332 ORTHO05D001894 2.4e-11 71.6 65 55.4
Gorai.009G094000 Gossypium raimondii HOM05D001332 ORTHO05D001894 2.4e-11 71.6 60 56.7
Potri.009G042100 Populus trichocarpa HOM05D001332 ORTHO05D001894 2.4e-11 71.6 64 53.1
Sabra09G0029600 Salix brachista HOM05D001332 ORTHO05D001894 3.2e-11 71.2 64 53.1
RcHm_v2.0_Chr5g0068411 Rosa chinensis HOM05D001332 ORTHO05D001894 4.1e-11 70.9 64 56.2
Ah.08g220480 Amaranthus hybridus HOM05D001332 ORTHO05D001894 9.2e-11 69.7 63 50.8
CSS0019650 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 9.2e-11 69.7 64 51.6
Hma1.2p1_0227F.1_g096190 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 9.2e-11 69.7 65 49.2
Sed0017259 Sechium edule HOM05D001332 ORTHO05D001894 1.2e-10 69.3 64 51.6
FvH4_3g38010 Fragaria vesca HOM05D001332 ORTHO05D001894 1.6e-10 68.9 65 55.4
FvH4_3g38060 Fragaria vesca HOM05D001332 ORTHO05D001894 1.6e-10 68.9 65 55.4
Hund04896 Selenicereus undatus HOM05D001332 ORTHO05D001894 2.7e-10 68.2 63 47.6
FAN11G1207 Fragaria x ananassa HOM05D001332 ORTHO05D001894 3.5e-10 67.8 64 51.6
PGSC0003DMG400030433 Solanum tuberosum HOM05D001332 ORTHO05D001894 3.5e-10 67.8 64 53.1
CANSAT54G0936 Cannabis sativa HOM05D001332 ORTHO05D001894 4.6e-10 67.4 64 51.6
FvH4_3g37930 Fragaria vesca HOM05D001332 ORTHO05D001894 6.0e-10 67.0 64 51.6
CANSAT54G0012 Cannabis sativa HOM05D001332 ORTHO05D001894 7.8e-10 66.6 63 50.8
Peaxi162Scf01058g00148 Petunia axillaris HOM05D001332 ORTHO05D001894 7.8e-10 66.6 63 49.2
Cpa.g.sc9.218 Carica papaya HOM05D001332 ORTHO05D001894 1.7e-09 65.5 65 47.7
FAN25G3843 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.7e-09 65.5 65 53.8
Prupe.6G061900 Prunus persica HOM05D001332 ORTHO05D001894 1.7e-09 65.5 64 48.4
MD11G1081900 Malus domestica HOM05D001332 ORTHO05D001894 2.3e-09 65.1 64 48.4
Lsat_1_v5_gn_9_25641 Lactuca sativa HOM05D001332 ORTHO05D001894 3.9e-09 64.3 63 44.4
Prupe.6G062300 Prunus persica HOM05D001332 ORTHO05D001894 3.9e-09 64.3 64 46.9
EL10Ac7g16117 Beta vulgaris HOM05D001332 ORTHO05D001894 6.6e-09 63.5 57 49.1
Medtr5g069640 Medicago truncatula HOM05D001332 ORTHO05D001894 8.6e-09 63.2 67 49.3
MD11G1081700 Malus domestica HOM05D001332 ORTHO05D001894 1.1e-08 62.8 64 46.9
PGR091G0007 Punica granatum HOM05D001332 ORTHO05D001894 1.1e-08 62.8 63 47.6
PGR119G0063 Punica granatum HOM05D001332 ORTHO05D001894 1.1e-08 62.8 63 47.6
Solyc06g076680.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 1.1e-08 62.8 64 50.0
CsaV3_6G016430 Cucumis sativus L. HOM05D001332 ORTHO05D001894 1.5e-08 62.4 64 48.4
HanXRQChr08g0237251 Helianthus annuus HOM05D001332 ORTHO05D001894 1.5e-08 62.4 58 53.4
MD03G1077500 Malus domestica HOM05D001332 ORTHO05D001894 1.5e-08 62.4 63 49.2
Migut.D00863 Erythranthe guttata HOM05D001332 ORTHO05D001894 1.9e-08 62.0 66 45.5
Sopen06g033070 Solanum pennellii HOM05D001332 ORTHO05D001894 1.9e-08 62.0 64 50.0
GSVIVG01024800001 Vitis vinifera HOM05D001332 ORTHO05D001894 2.5e-08 61.6 63 46.0
FAN16G0327 Fragaria x ananassa HOM05D001332 ORTHO05D001894 3.3e-08 61.2 64 50.0
MD11G1081800 Malus domestica HOM05D001332 ORTHO05D001894 3.3e-08 61.2 64 46.9
SEGI_04421 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 4.3e-08 60.8 64 48.4
Psat2g059720 Pisum sativum HOM05D001332 ORTHO05D001894 5.6e-08 60.5 67 49.3
ECA247G2268 Erigeron canadensis HOM05D001332 ORTHO05D001894 7.3e-08 60.1 57 49.1
Lj6P130T6 Lonicera japonica HOM05D001332 ORTHO05D001894 7.3e-08 60.1 64 46.9
Lj6P172T2 Lonicera japonica HOM05D001332 ORTHO05D001894 7.3e-08 60.1 64 46.9
RcHm_v2.0_Chr5g0068361 Rosa chinensis HOM05D001332 ORTHO05D001894 7.3e-08 60.1 64 50.0
FvH4_3g38000 Fragaria vesca HOM05D001332 ORTHO05D001894 9.5e-08 59.7 63 49.2
FvH4_3g38050 Fragaria vesca HOM05D001332 ORTHO05D001894 9.5e-08 59.7 63 49.2
Rhsim13G0073300 Rhododendron simsii HOM05D001332 ORTHO05D001894 1.2e-07 59.3 63 47.6
RcHm_v2.0_Chr5g0068381 Rosa chinensis HOM05D001332 ORTHO05D001894 1.2e-07 59.3 63 46.0
ECA247G1945 Erigeron canadensis HOM05D001332 ORTHO05D001894 2.8e-07 58.2 60 46.7
RcHm_v2.0_Chr5g0068391 Rosa chinensis HOM05D001332 ORTHO05D001894 3.6e-07 57.8 63 46.0
RcHm_v2.0_Chr5g0068401 Rosa chinensis HOM05D001332 ORTHO05D001894 3.6e-07 57.8 63 42.9
Glyma.02G224300 Glycine max HOM05D001332 ORTHO05D001894 4.7e-07 57.4 64 46.9
Nitab4.5_0010287g0040 Nicotiana tabacum HOM05D001332 ORTHO05D001894 4.7e-07 57.4 51 54.9
Ca_05578_v3 Cicer arietinum L. HOM05D001332 ORTHO05D001894 6.2e-07 57.0 67 44.8
Oeu035008.1 Olea europaea HOM05D001332 ORTHO05D001894 6.2e-07 57.0 65 47.7
ClCG02G019730 Citrullus lanatus HOM05D001332 ORTHO05D001894 8.1e-07 56.6 57 47.4
HanXRQChr15g0492661 Helianthus annuus HOM05D001332 ORTHO05D001894 8.1e-07 56.6 63 39.7
LjContig00155g0020500 Lotus japonicus HOM05D001332 ORTHO05D001894 8.1e-07 56.6 66 43.9
MD03G1077400 Malus domestica HOM05D001332 ORTHO05D001894 1.1e-06 56.2 64 45.3
Prupe.6G062200 Prunus persica HOM05D001332 ORTHO05D001894 1.1e-06 56.2 65 47.7
Phvul.008G263600 Phaseolus vulgaris HOM05D001332 ORTHO05D001894 1.4e-06 55.8 64 48.4
THA.LOC104800718 Tarenaya hassleriana HOM05D001332 ORTHO05D001894 1.8e-06 55.5 63 42.9
MSTRG.21225 Avicennia marina HOM05D001332 ORTHO05D001894 2.3e-06 55.1 66 45.5
ECA247G3872 Erigeron canadensis HOM05D000731 ORTHO05D003300 2.3e-06 55.1 62 41.9
MD08G1031500 Malus domestica HOM05D001332 ORTHO05D001894 2.3e-06 55.1 63 46.0
PSO384G3494 Papaver somniferum HOM05D001332 ORTHO05D001894 2.3e-06 55.1 64 43.8
TPR.G24033 Trifolium pratense HOM05D001332 ORTHO05D001894 2.3e-06 55.1 37 59.5
Lalb_Chr04g0252391 Lupinus albus HOM05D001332 ORTHO05D001894 3.1e-06 54.7 67 41.8
RcHm_v2.0_Chr5g0068441 Rosa chinensis HOM05D001332 ORTHO05D001894 3.1e-06 54.7 63 44.4
SalBow6G3098 Salvia bowleyana HOM05D001332 ORTHO05D001894 3.1e-06 54.7 67 44.8
Nn2g11367 Nelumbo nucifera HOM05D001332 ORTHO05D001894 5.2e-06 53.9 58 46.6
MD11G1081600 Malus domestica HOM05D001332 ORTHO05D001894 8.9e-06 53.1 64 45.3


User provided reference genes

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