Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 2.9e-60 235.0 114 100.0
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 7.3e-35 150.6 86 83.7
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 1.2e-34 149.8 94 76.6
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 2.1e-34 149.1 100 75.0
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 2.8e-34 148.7 110 68.2
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 6.8e-33 144.1 114 65.8
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 8.9e-33 143.7 107 67.3
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 8.9e-33 143.7 108 66.7
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.2e-32 143.3 107 67.3
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.5e-32 142.9 107 67.3
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.4e-32 141.7 107 66.4
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 4.4e-32 141.4 107 67.3
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 5.8e-32 141.0 107 66.4
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 7.6e-32 140.6 108 64.8
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 9.9e-32 140.2 107 67.3
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 1.7e-31 139.4 99 68.7
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.7e-31 139.4 98 66.3
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.2e-31 139.0 107 64.5
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 2.2e-31 139.0 107 64.5
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.2e-31 139.0 110 64.5
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.9e-31 138.7 107 63.6
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 2.9e-31 138.7 108 64.8
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.9e-31 138.7 114 63.2
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 2.9e-31 138.7 114 60.5
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 4.9e-31 137.9 98 68.4
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 4.9e-31 137.9 98 68.4
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 4.9e-31 137.9 114 59.6
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 6.4e-31 137.5 107 65.4
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 8.4e-31 137.1 98 66.3
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 1.4e-30 136.3 108 62.0
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 1.4e-30 136.3 108 62.0
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.4e-30 136.3 114 64.0
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.4e-30 136.3 107 65.4
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.9e-30 136.0 99 65.7
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 1.9e-30 136.0 107 61.7
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 1.9e-30 136.0 117 65.0
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.9e-30 136.0 107 63.6
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.4e-30 135.6 108 62.0
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 2.4e-30 135.6 115 63.5
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.2e-30 135.2 114 61.4
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 3.2e-30 135.2 114 58.8
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 3.2e-30 135.2 114 58.8
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 5.4e-30 134.4 109 61.5
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 5.4e-30 134.4 107 61.7
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 5.4e-30 134.4 107 62.6
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 5.4e-30 134.4 114 60.5
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 9.2e-30 133.7 107 66.4
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 9.2e-30 133.7 115 57.4
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.2e-29 133.3 107 61.7
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.2e-29 133.3 101 62.4
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.6e-29 132.9 107 62.6
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.1e-29 132.5 107 60.7
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.1e-29 132.5 113 59.3
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 2.7e-29 132.1 108 61.1
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.7e-29 132.1 108 61.1
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.7e-29 132.1 125 57.6
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 6.0e-29 131.0 101 64.4
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 7.8e-29 130.6 107 59.8
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 1.0e-28 130.2 107 61.7
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 1.0e-28 130.2 113 61.1
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 2.3e-28 129.0 114 59.6
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 3.0e-28 128.6 109 60.6
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 3.9e-28 128.3 107 62.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 8.6e-28 127.1 103 63.1
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 1.5e-27 126.3 82 68.3
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 1.9e-27 125.9 107 59.8
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 4.3e-27 124.8 100 63.0
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 5.6e-27 124.4 101 62.4
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 5.6e-27 124.4 86 73.3
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 5.6e-27 124.4 116 58.6
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 9.6e-27 123.6 83 68.7
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 9.6e-27 123.6 116 58.6
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 9.6e-27 123.6 99 62.6
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.2e-26 123.2 83 71.1
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 2.1e-26 122.5 83 71.1
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 2.1e-26 122.5 98 62.2
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 2.8e-26 122.1 102 59.8
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 2.8e-26 122.1 79 69.6
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.8e-26 122.1 101 59.4
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 4.7e-26 121.3 93 66.7
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 4.7e-26 121.3 100 62.0
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 8.1e-26 120.6 96 63.5
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 8.1e-26 120.6 96 61.5
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.4e-25 119.8 104 62.5
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.4e-25 119.8 83 69.9
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 4.0e-25 118.2 83 67.5
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 6.9e-25 117.5 83 66.3
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 6.9e-25 117.5 115 60.0
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 8.9e-25 117.1 110 59.1
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.2e-24 116.7 111 58.6
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 1.5e-24 116.3 76 75.0
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.5e-24 116.3 109 53.2
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 2.0e-24 115.9 102 56.9
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 4.4e-24 114.8 101 54.5
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 5.8e-24 114.4 90 62.2
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 1.3e-23 113.2 92 63.0
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 1.3e-23 113.2 92 63.0
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.3e-23 113.2 92 63.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.3e-23 113.2 83 66.3
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.3e-23 113.2 105 59.0
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 2.2e-23 112.5 83 67.5
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 2.9e-23 112.1 90 64.4
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 2.9e-23 112.1 83 67.5
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 2.9e-23 112.1 146 44.5
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.9e-23 112.1 92 62.0
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.9e-23 112.1 92 62.0
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 2.9e-23 112.1 106 52.8
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 3.8e-23 111.7 92 62.0
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.8e-23 111.7 76 71.1
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 3.8e-23 111.7 76 71.1
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 4.9e-23 111.3 92 62.0
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 4.9e-23 111.3 92 62.0
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.4e-23 110.9 79 65.8
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 1.1e-22 110.2 111 46.8
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 1.4e-22 109.8 83 65.1
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.2e-22 108.6 83 63.9
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 7.1e-22 107.5 90 61.1
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 3.5e-21 105.1 70 72.9
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.0e-20 103.6 85 58.8
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.3e-20 103.2 106 43.4
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 3.9e-20 101.7 83 60.2
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 6.6e-20 100.9 74 62.2
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 9.6e-19 97.1 88 59.1
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 6.2e-18 94.4 86 59.3
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 4.0e-17 91.7 83 56.6
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 5.3e-17 91.3 85 49.4
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 9.9e-16 87.0 107 44.9
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 1.7e-15 86.3 114 46.5
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 6.4e-15 84.3 112 49.1
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.2e-13 80.1 56 67.9
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 2.1e-13 79.3 60 63.3
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 8.7e-12 73.9 51 68.6
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 8.7e-12 73.9 75 42.7
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 3.3e-11 72.0 47 74.5
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 3.6e-10 68.6 59 62.7
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.2e-06 55.5 47 57.4


User provided reference genes

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