Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.1e-231 806.2 408 100.0
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 7.0e-181 637.5 375 83.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.0e-179 633.6 408 76.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.3e-179 633.3 408 76.5
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.9e-178 629.4 408 76.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.1e-176 623.6 372 80.6
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.7e-174 616.3 407 74.9
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.4e-173 613.2 379 78.4
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.1e-172 609.4 355 82.3
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 6.0e-172 607.8 390 77.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.3e-171 606.7 409 73.3
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 6.6e-171 604.4 356 82.0
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 6.6e-171 604.4 355 81.7
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.1e-170 603.6 369 79.1
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.5e-170 602.4 375 78.7
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 4.3e-170 601.7 388 76.0
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 5.6e-170 601.3 352 81.8
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.2e-169 600.1 356 81.2
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.6e-169 599.7 381 77.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.1e-169 599.4 374 77.8
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.8e-169 599.0 369 78.6
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.4e-168 596.7 375 77.9
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.8e-168 596.3 356 80.3
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.8e-168 596.3 356 81.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.1e-168 595.5 360 80.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.1e-168 595.5 411 72.3
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 4.0e-168 595.1 356 81.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 8.9e-168 594.0 356 80.1
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.2e-167 593.6 371 77.6
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.6e-167 592.4 376 78.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 4.4e-167 591.7 356 80.6
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 9.9e-167 590.5 380 76.8
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.2e-166 589.3 382 76.7
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.8e-166 588.6 372 78.2
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.8e-166 588.6 369 78.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 6.4e-166 587.8 376 77.9
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.1e-165 587.0 374 76.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.4e-165 585.9 381 76.9
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.2e-165 585.5 399 73.7
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 4.2e-165 585.1 400 72.8
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 4.2e-165 585.1 381 77.2
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 9.2e-165 583.9 392 74.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 9.2e-165 583.9 373 78.6
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.6e-164 583.2 373 76.9
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.1e-164 582.8 327 84.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.7e-164 582.4 359 79.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 3.5e-164 582.0 396 74.7
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.5e-164 582.0 401 71.8
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.6e-164 581.6 359 79.4
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.3e-163 580.1 381 76.4
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.3e-163 579.3 365 77.3
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.9e-163 578.6 356 78.7
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 8.7e-163 577.4 377 74.3
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.1e-162 577.0 410 70.7
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 2.5e-162 575.9 356 78.4
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 2.5e-162 575.9 356 78.4
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.5e-162 575.9 352 80.1
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.5e-162 575.9 356 77.8
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.3e-162 575.5 361 78.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 4.3e-162 575.1 388 74.0
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 9.6e-162 573.9 399 73.2
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-161 573.5 356 78.4
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.6e-161 573.2 365 75.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 2.1e-161 572.8 373 76.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.1e-161 572.8 389 74.6
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.8e-161 572.4 365 76.4
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 4.7e-161 571.6 356 76.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 1.4e-160 570.1 365 76.7
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.4e-160 569.3 392 73.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.4e-160 569.3 359 77.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.1e-160 568.9 356 76.7
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 4.0e-160 568.5 369 75.6
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.0e-160 568.5 362 76.5
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 4.0e-160 568.5 356 77.2
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 5.3e-160 568.2 414 68.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 6.9e-160 567.8 390 74.4
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.2e-159 567.0 371 76.3
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.5e-159 566.6 359 76.0
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.0e-159 566.2 375 74.4
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 2.6e-159 565.8 364 74.5
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 4.4e-159 565.1 384 71.6
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 7.6e-159 564.3 359 75.8
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 9.9e-159 563.9 399 69.7
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.7e-158 563.1 356 75.6
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.2e-158 562.8 356 75.8
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 6.4e-158 561.2 356 75.3
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 5.4e-157 558.1 363 75.2
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 5.4e-157 558.1 359 75.5
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.1e-156 556.2 378 72.0
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 7.8e-156 554.3 379 71.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.0e-155 553.9 389 72.8
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.7e-155 553.1 366 75.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.5e-154 550.1 314 83.1
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.9e-154 549.7 346 77.7
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 7.3e-154 547.7 376 72.9
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 7.3e-154 547.7 371 73.3
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.1e-153 546.2 364 73.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 8.1e-153 544.3 358 75.1
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 8.1e-153 544.3 356 75.3
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.1e-152 543.9 381 73.0
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.2e-151 540.4 370 71.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 8.4e-150 534.3 361 72.3
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 4.2e-149 531.9 361 72.0
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 5.4e-149 531.6 385 70.4
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.0e-147 527.3 351 73.5
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 7.4e-146 521.2 380 69.5
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 7.4e-146 521.2 436 63.8
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.7e-145 518.8 314 79.9
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 4.8e-145 518.5 359 69.1
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.0e-143 513.1 356 72.2
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.8e-143 511.5 365 69.3
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 7.1e-141 504.6 574 50.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 9.3e-141 504.2 366 70.5
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.6e-140 501.9 356 71.1
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.4e-135 485.7 292 80.8
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.9e-130 469.9 375 61.9
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.7e-126 456.8 350 64.0
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 4.7e-116 422.2 284 73.2
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.0e-114 416.8 364 61.3
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.6e-78 295.4 194 75.3
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 1.5e-69 267.7 374 43.3
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 6.2e-68 262.3 147 83.0
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 7.3e-61 238.8 297 50.5
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-59 235.0 174 62.6
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 7.3e-53 212.2 186 61.3
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.7e-49 201.1 152 67.1
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.3e-44 184.9 112 80.4
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.1e-40 169.1 112 75.0
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.3e-33 148.3 81 81.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 2.7e-31 140.6 341 30.5
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 5.3e-27 126.3 88 71.6
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.6e-26 124.0 83 72.3
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 6.1e-15 86.3 53 75.5
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.5e-13 81.6 132 40.9
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 9.0e-11 72.4 47 68.1
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.5e-08 64.3 69 55.1


User provided reference genes

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