Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.9e-90 334.7 163 100.0
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.3e-73 278.5 163 83.4
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.0e-46 189.5 175 56.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.2e-45 186.0 189 53.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 2.9e-45 185.7 167 57.5
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.8e-45 185.3 184 53.8
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.1e-44 183.7 176 55.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.6e-43 179.9 180 55.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.7e-43 178.3 180 55.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 6.1e-43 177.9 180 52.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 6.8e-42 174.5 181 54.7
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.8e-42 174.5 179 54.2
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.8e-42 174.5 181 54.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.5e-41 173.3 184 54.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 5.7e-41 171.4 178 53.4
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.7e-41 170.6 175 52.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.7e-41 170.6 182 51.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.3e-40 170.2 166 52.4
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-40 170.2 176 52.8
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-40 170.2 176 52.8
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 8.3e-40 167.5 180 52.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 8.3e-40 167.5 173 52.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.1e-39 167.2 179 51.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.4e-39 166.8 166 51.8
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.4e-39 166.8 179 49.7
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.4e-39 166.8 172 50.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.8e-39 166.4 167 53.9
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-39 166.0 179 53.6
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.4e-39 166.0 179 53.6
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.4e-39 166.0 186 50.0
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.1e-39 165.6 182 49.5
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.1e-39 165.6 179 53.6
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.1e-39 165.6 184 50.5
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 4.1e-39 165.2 185 49.2
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.3e-39 164.9 172 52.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 5.3e-39 164.9 174 51.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.0e-39 164.5 178 48.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.0e-39 164.5 178 48.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 7.0e-39 164.5 177 48.6
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 7.0e-39 164.5 173 48.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 9.1e-39 164.1 173 50.9
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 9.1e-39 164.1 171 50.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.1e-39 164.1 172 52.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 9.1e-39 164.1 186 50.5
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 9.1e-39 164.1 169 50.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 9.1e-39 164.1 189 51.9
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-38 163.7 201 49.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.2e-38 163.7 167 50.3
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.2e-38 163.7 178 48.3
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-38 163.7 167 50.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.6e-38 163.3 180 50.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.0e-38 162.9 182 46.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.0e-38 162.9 173 50.3
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.0e-38 162.9 179 49.7
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.5e-38 162.2 175 50.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.5e-38 162.2 176 49.4
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.5e-38 162.2 182 49.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.5e-38 162.2 172 51.7
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 5.9e-38 161.4 176 49.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.9e-38 161.4 191 49.7
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 7.7e-38 161.0 179 50.3
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 7.7e-38 161.0 129 62.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.0e-37 160.6 191 49.2
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.0e-37 160.6 187 48.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-37 160.2 175 48.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.3e-37 160.2 196 48.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.7e-37 159.8 189 47.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.2e-37 159.5 182 51.6
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.9e-37 159.1 182 48.9
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 3.8e-37 158.7 189 47.1
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 6.5e-37 157.9 176 45.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.1e-36 157.1 190 50.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.1e-36 157.1 186 47.8
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-36 157.1 195 45.6
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.5e-36 156.8 190 46.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.5e-36 156.8 186 45.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-36 156.4 172 48.3
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.5e-36 156.0 195 45.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.2e-36 155.2 162 51.9
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 5.5e-36 154.8 179 49.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.2e-35 153.7 180 49.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.2e-35 153.7 182 46.7
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.2e-35 153.7 195 46.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.6e-35 153.3 191 47.6
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-35 153.3 175 48.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.1e-35 152.9 192 44.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.1e-35 152.9 187 48.1
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.7e-35 152.5 186 47.3
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 3.6e-35 152.1 165 46.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.0e-34 150.6 179 46.9
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.8e-34 149.8 192 45.3
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.0e-34 149.1 196 47.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.8e-34 147.5 165 52.1
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.2e-33 147.1 145 52.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.2e-33 147.1 176 48.3
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.5e-33 146.7 191 43.5
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 5.7e-33 144.8 191 44.5
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 7.5e-33 144.4 156 50.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.8e-33 144.1 141 56.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.7e-32 143.3 185 42.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.2e-32 142.9 176 47.7
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.2e-32 142.9 145 51.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.8e-32 141.7 154 49.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.3e-32 141.4 181 47.0
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.1e-31 140.6 204 42.6
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.1e-31 139.0 193 43.0
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 5.4e-31 138.3 183 45.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.0e-31 137.9 191 44.5
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.1e-31 137.5 140 52.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.7e-30 136.0 201 39.8
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-30 135.6 178 44.4
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.5e-30 135.2 180 45.0
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.0e-29 134.0 187 43.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.3e-29 133.7 182 44.5
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.0e-29 131.7 162 42.6
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.1e-28 130.6 192 41.7
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 9.5e-28 127.5 148 43.9
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.6e-27 126.7 179 41.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.0e-26 124.0 183 42.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.2e-26 121.7 123 50.4
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 5.2e-26 121.7 194 37.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 8.9e-26 120.9 139 40.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-25 120.6 115 55.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.5e-25 120.2 191 40.3
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-25 119.8 116 55.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.0e-25 119.8 127 52.0
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-24 117.1 135 40.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 3.7e-24 115.5 178 40.4
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.2e-23 112.5 114 51.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-22 109.8 111 49.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.0e-22 109.8 189 37.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.3e-21 107.1 154 39.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.9e-21 105.9 96 50.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 8.6e-21 104.4 100 51.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.3e-20 102.1 158 38.0
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.2e-19 100.5 88 48.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-19 100.1 101 55.4
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.0e-19 97.8 133 39.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.4e-18 97.1 101 54.5
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.5e-17 93.6 88 51.1
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.4e-17 92.4 162 39.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 7.5e-17 91.3 81 46.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.9e-15 86.7 135 37.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.2e-15 84.3 92 44.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.6e-14 83.6 100 41.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.0e-14 83.2 160 33.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.7e-13 80.1 90 42.2
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 8.6e-13 77.8 160 33.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.1e-11 73.2 88 40.9
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.8e-11 72.8 135 40.0
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.7e-08 62.4 97 44.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.4e-07 59.7 93 45.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 9.2e-07 57.8 146 30.1
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-06 57.0 102 36.3


User provided reference genes

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