Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.5e-101 372.1 184 100.0
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.2e-72 275.4 163 83.4
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 7.3e-61 237.7 193 64.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 7.3e-61 237.7 208 60.6
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 2.8e-60 235.7 191 63.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.9e-59 231.1 213 58.2
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 9.0e-59 230.7 200 59.5
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.4e-58 228.4 200 60.0
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.2e-57 226.1 196 61.7
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 8.4e-57 224.2 197 60.9
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 2.4e-56 222.6 198 61.1
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-56 222.6 198 61.1
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-56 222.6 196 61.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.4e-56 222.6 197 59.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.2e-56 221.9 208 59.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.4e-56 221.5 196 60.7
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 5.4e-56 221.5 186 61.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 5.4e-56 221.5 206 60.2
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.1e-55 219.5 204 57.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.1e-55 219.5 196 58.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.5e-55 218.8 202 58.4
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-55 218.4 200 60.5
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 4.6e-55 218.4 200 60.5
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.6e-55 218.4 191 60.2
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.9e-55 217.6 197 58.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.0e-54 217.2 215 56.7
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.7e-54 216.5 203 57.6
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 2.3e-54 216.1 201 60.2
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.9e-54 215.3 188 61.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.7e-54 214.2 202 56.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.5e-53 213.4 190 58.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-53 213.0 191 59.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.5e-53 212.6 208 56.7
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.5e-53 212.6 195 59.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.5e-53 212.6 195 59.5
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.5e-53 212.6 205 58.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.3e-53 211.8 195 59.5
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.3e-53 211.8 196 56.1
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.6e-53 211.5 198 56.1
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 7.3e-53 211.1 197 56.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 9.6e-53 210.7 191 58.1
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.3e-52 210.3 208 56.2
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.3e-52 210.3 195 59.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.6e-52 209.9 199 56.8
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.6e-52 209.9 197 54.3
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.6e-52 209.9 194 58.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.1e-52 209.5 190 57.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.8e-52 209.1 207 53.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.6e-52 208.8 209 54.5
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 6.2e-52 208.0 193 57.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 8.1e-52 207.6 214 54.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-51 207.2 197 57.9
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-51 206.8 191 56.5
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.4e-51 206.8 216 54.2
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-51 206.8 191 58.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-51 206.1 189 57.1
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 2.4e-51 206.1 200 55.5
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.1e-51 205.7 209 55.5
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 3.1e-51 205.7 218 54.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 3.1e-51 205.7 210 53.8
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 4.0e-51 205.3 200 55.5
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.0e-51 205.3 209 54.1
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.3e-51 204.9 208 54.3
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 6.9e-51 204.5 206 51.9
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.2e-50 203.8 216 51.4
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.2e-50 203.8 209 53.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-50 203.4 195 54.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.0e-50 203.0 181 58.0
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-50 202.6 188 56.4
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-50 202.6 202 53.0
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.6e-50 202.6 202 53.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 4.5e-50 201.8 202 53.0
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.8e-50 201.4 202 55.4
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 9.9e-50 200.7 202 56.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 9.9e-50 200.7 208 52.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.3e-49 200.3 200 52.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.7e-49 199.9 202 54.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.7e-49 199.9 208 56.2
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.8e-49 198.7 196 57.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 3.8e-49 198.7 213 50.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-48 197.2 198 55.6
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.9e-48 196.4 199 53.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.4e-48 196.1 207 54.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.4e-48 196.1 216 52.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.4e-48 196.1 198 54.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.2e-48 195.7 208 51.9
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.1e-48 194.5 209 54.1
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.2e-47 193.7 181 53.0
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.7e-47 192.6 190 53.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.5e-47 192.2 206 51.9
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.5e-47 192.2 213 53.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.0e-46 190.7 210 49.5
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.8e-46 189.9 199 54.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.0e-46 189.1 221 51.1
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.9e-46 188.7 193 54.4
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.1e-46 188.3 162 59.3
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.5e-45 186.0 203 52.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.3e-45 185.7 192 54.7
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 5.6e-45 184.9 201 50.2
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.4e-45 184.5 221 47.5
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-44 181.8 175 57.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 8.1e-44 181.0 221 47.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.1e-43 180.6 207 50.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.3e-43 178.3 161 59.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-42 177.2 212 49.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.4e-42 175.6 199 50.8
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 5.8e-42 174.9 209 49.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.8e-42 174.9 206 49.5
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.3e-41 173.7 201 46.3
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.7e-41 173.3 224 46.4
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.1e-40 170.6 211 48.3
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.2e-40 168.7 207 47.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.9e-38 162.2 177 53.7
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 8.7e-38 161.0 204 47.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.7e-37 158.3 212 44.3
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 5.7e-37 158.3 215 44.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 3.7e-36 155.6 183 48.6
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.8e-36 155.2 137 59.1
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 6.2e-36 154.8 209 46.9
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.1e-35 154.1 221 42.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.8e-35 153.3 206 45.6
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.1e-35 152.1 179 45.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.1e-35 152.1 150 54.0
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.9e-33 146.0 184 46.2
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.1e-32 144.1 210 41.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.5e-32 142.9 122 63.1
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.2e-32 142.5 123 56.1
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.1e-31 139.8 122 62.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-31 139.8 191 40.3
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.7e-31 139.4 111 60.4
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.3e-30 136.3 181 43.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 5.7e-29 131.7 182 37.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 5.7e-29 131.7 135 53.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.3e-28 128.3 114 57.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.2e-26 124.0 176 44.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-26 122.9 146 49.3
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.1e-24 117.5 88 53.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 5.5e-24 115.2 191 36.6
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.2e-24 114.8 166 41.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.4e-24 114.4 157 40.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.0e-22 110.9 98 56.1
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.8e-22 110.2 152 47.4
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 4.3e-21 105.5 185 38.4
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.7e-20 103.6 130 38.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 8.2e-20 101.3 100 50.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-19 100.9 139 41.7
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.9e-18 95.1 134 40.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.9e-18 95.1 163 38.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 8.5e-17 91.3 89 48.3
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.2e-16 89.4 117 47.9
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.5e-16 88.6 92 45.7
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.6e-15 87.0 114 49.1
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 6.7e-14 81.6 113 42.5
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 8.5e-09 64.7 149 33.6
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 6.1e-07 58.5 69 44.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.3e-06 56.6 99 41.4
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 6.7e-06 55.1 67 44.8


User provided reference genes

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