Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0219G025 Amborella trichopoda HOM05D004063 ORTHO05D005326 1.1e-50 203.0 99 100.0
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 2.3e-32 142.1 81 86.4
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 2.6e-28 128.6 79 78.5
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 2.6e-28 128.6 76 81.6
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 2.6e-28 128.6 76 81.6
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.6e-28 128.6 81 75.3
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 5.7e-28 127.5 78 75.6
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 7.5e-28 127.1 76 77.6
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 7.5e-28 127.1 76 77.6
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 7.5e-28 127.1 76 77.6
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 7.5e-28 127.1 76 77.6
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 9.8e-28 126.7 85 75.3
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 1.3e-27 126.3 81 74.1
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.7e-27 125.9 76 77.6
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 1.7e-27 125.9 76 76.3
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.2e-27 125.6 81 75.3
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.2e-27 125.6 81 75.3
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 2.9e-27 125.2 76 76.3
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 2.9e-27 125.2 76 76.3
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 2.9e-27 125.2 81 74.1
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 2.9e-27 125.2 77 75.3
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 2.9e-27 125.2 80 73.8
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 2.9e-27 125.2 81 72.8
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 3.7e-27 124.8 77 74.0
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 3.7e-27 124.8 81 71.6
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 6.4e-27 124.0 74 79.7
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 6.4e-27 124.0 85 72.9
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 8.3e-27 123.6 76 76.3
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 8.3e-27 123.6 77 75.3
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 8.3e-27 123.6 76 78.9
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 1.1e-26 123.2 80 72.5
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.1e-26 123.2 76 75.0
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 1.1e-26 123.2 80 70.0
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.4e-26 122.9 78 76.9
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 1.4e-26 122.9 81 72.8
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 1.4e-26 122.9 80 72.5
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 1.4e-26 122.9 80 73.8
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 1.4e-26 122.9 76 77.6
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.4e-26 122.9 76 77.6
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 1.4e-26 122.9 80 73.8
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.8e-26 122.5 76 73.7
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 1.8e-26 122.5 76 75.0
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 1.8e-26 122.5 76 75.0
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.8e-26 122.5 76 75.0
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 1.8e-26 122.5 78 74.4
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 71.2
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 71.2
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 2.4e-26 122.1 76 76.3
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 72.5
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 72.5
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 2.4e-26 122.1 76 76.3
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 2.4e-26 122.1 76 73.7
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 2.4e-26 122.1 78 73.1
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 2.4e-26 122.1 77 75.3
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 2.4e-26 122.1 76 73.7
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 68.8
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 71.2
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 2.4e-26 122.1 80 72.5
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 3.2e-26 121.7 80 73.8
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 3.2e-26 121.7 76 73.7
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 3.2e-26 121.7 80 72.5
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 4.1e-26 121.3 76 77.6
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 4.1e-26 121.3 76 77.6
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 4.1e-26 121.3 76 73.7
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 4.1e-26 121.3 81 67.9
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 4.1e-26 121.3 76 77.6
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 4.1e-26 121.3 78 75.6
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 5.4e-26 120.9 74 74.3
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 5.4e-26 120.9 81 69.1
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 5.4e-26 120.9 80 67.5
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 5.4e-26 120.9 81 69.1
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 7.0e-26 120.6 80 70.0
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 7.0e-26 120.6 80 70.0
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 7.0e-26 120.6 82 69.5
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.0e-26 120.6 74 78.4
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.0e-26 120.6 74 78.4
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 7.0e-26 120.6 74 78.4
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 7.0e-26 120.6 76 75.0
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 7.0e-26 120.6 81 70.4
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 7.0e-26 120.6 80 72.5
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 9.2e-26 120.2 80 71.2
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 9.2e-26 120.2 80 71.2
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 9.2e-26 120.2 74 77.0
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.2e-26 120.2 74 77.0
SalBow5G5369 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.2e-26 120.2 74 77.0
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 9.2e-26 120.2 81 70.4
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.2e-25 119.8 76 75.0
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 1.2e-25 119.8 78 70.5
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 1.2e-25 119.8 76 75.0
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 1.2e-25 119.8 81 69.1
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 1.2e-25 119.8 76 73.7
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.2e-25 119.8 80 71.2
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 1.6e-25 119.4 76 75.0
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.0e-25 119.0 76 69.7
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 2.0e-25 119.0 76 69.7
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 2.0e-25 119.0 76 69.7
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 2.0e-25 119.0 76 72.4
Cc07_g21130 Coffea canephora HOM05D004063 ORTHO05D005326 2.7e-25 118.6 97 60.8
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 3.5e-25 118.2 78 71.8
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 3.5e-25 118.2 80 70.0
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 3.5e-25 118.2 78 73.1
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.5e-25 118.2 76 73.7
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 4.6e-25 117.9 84 69.0
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 4.6e-25 117.9 76 72.4
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 4.6e-25 117.9 78 74.4
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 5.9e-25 117.5 84 69.0
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 5.9e-25 117.5 76 72.4
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 5.9e-25 117.5 76 72.4
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 7.8e-25 117.1 76 69.7
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 7.8e-25 117.1 76 73.7
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 1.7e-24 115.9 76 71.1
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.7e-24 115.9 76 72.4
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 2.3e-24 115.5 80 68.8
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 2.3e-24 115.5 80 71.2
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 3.0e-24 115.2 76 69.7
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 3.9e-24 114.8 78 69.2
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 5.0e-24 114.4 82 72.0
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 5.0e-24 114.4 76 72.4
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 1.1e-23 113.2 76 67.1
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 2.5e-23 112.1 76 69.7
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 6.2e-22 107.5 73 68.5
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 1.1e-21 106.7 106 53.8
AagrBONN_evm.TU.Sc2ySwM_117.93 Anthoceros agrestis HOM05D004063 ORTHO05D005326 2.3e-21 105.5 74 67.6
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 2.3e-21 105.5 78 65.4
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 6.8e-21 104.0 74 63.5
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.5e-20 102.8 65 67.7
Cpa.g.sc801.1 Carica papaya HOM05D004063 ORTHO05D005326 3.4e-20 101.7 61 75.4
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.1e-18 96.7 109 50.5
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 2.4e-18 95.5 78 60.3
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 5.4e-18 94.4 78 60.3
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 9.2e-18 93.6 64 71.9
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 2.5e-15 85.5 79 54.4
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.1e-13 80.1 79 49.4
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 2.3e-13 79.0 62 58.1
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 2.3e-13 79.0 48 75.0
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 2.3e-13 79.0 76 50.0
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 5.2e-13 77.8 68 55.9
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 5.2e-13 77.8 53 67.9
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 7.5e-12 73.9 49 69.4
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 1.3e-11 73.2 105 37.1
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 9.2e-10 67.0 46 63.0
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 4.6e-09 64.7 42 69.0
Oeu037745.1 Olea europaea HOM05D004063 ORTHO05D005326 1.7e-08 62.8 43 60.5
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 1.1e-07 60.1 82 43.9
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.9e-07 59.3 45 53.3
TAR381G0210 Trochodendron aralioides HOM05D004063 ORTHO05D005326 3.6e-06 55.1 37 67.6


User provided reference genes

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