Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.2e-75 285.0 145 100.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.0e-57 225.3 140 86.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.0e-29 132.9 142 49.3
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.3e-25 119.4 146 44.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.0e-25 119.0 144 47.2
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.5e-24 116.7 140 46.4
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.5e-24 116.7 142 44.4
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 5.6e-24 114.8 140 46.4
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.4e-24 114.4 146 43.8
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.3e-23 113.6 146 43.8
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.8e-23 111.7 133 43.6
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.8e-23 111.7 133 43.6
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 6.2e-23 111.3 133 43.6
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 6.2e-23 111.3 144 43.1
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 6.2e-23 111.3 143 44.1
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 8.2e-23 110.9 140 44.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 8.2e-23 110.9 143 43.4
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.4e-22 110.2 135 45.2
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.4e-22 109.4 138 42.8
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.4e-22 109.4 141 46.1
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 4.0e-22 108.6 134 45.5
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 4.0e-22 108.6 138 45.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 4.0e-22 108.6 133 43.6
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 6.9e-22 107.8 138 42.8
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 6.9e-22 107.8 138 42.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.2e-21 107.1 94 57.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.5e-21 106.7 129 48.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.5e-21 106.7 138 44.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.5e-21 106.7 133 42.1
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.0e-21 106.3 134 47.0
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.6e-21 105.9 140 45.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.6e-21 105.9 138 42.8
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 2.6e-21 105.9 138 42.0
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.6e-21 105.9 134 47.0
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.4e-21 105.5 140 45.0
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.4e-21 105.5 140 45.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 4.5e-21 105.1 138 42.0
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.5e-21 105.1 140 45.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 7.6e-21 104.4 133 44.4
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 7.6e-21 104.4 138 42.0
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.7e-20 103.2 139 46.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.7e-20 103.2 129 41.1
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.7e-20 103.2 138 41.3
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.2e-20 102.8 138 42.8
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.2e-20 102.8 138 47.1
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.2e-20 102.8 133 43.6
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.8e-20 102.1 138 40.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.8e-20 102.1 132 42.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 3.8e-20 102.1 144 44.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 4.9e-20 101.7 133 42.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.5e-20 101.3 138 39.9
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 6.5e-20 101.3 146 41.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 8.4e-20 100.9 138 39.1
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.1e-19 100.5 138 39.9
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.1e-19 100.5 137 43.1
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.1e-19 100.5 137 41.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.4e-19 100.1 147 42.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.9e-19 99.8 133 44.4
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.9e-19 99.8 132 43.2
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.5e-19 99.4 133 42.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.2e-19 99.0 85 61.2
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 4.2e-19 98.6 146 39.0
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.5e-19 98.2 133 43.6
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 7.1e-19 97.8 93 54.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 7.1e-19 97.8 137 38.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 7.1e-19 97.8 138 39.9
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.1e-19 97.8 140 42.1
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.1e-19 97.8 140 42.1
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 7.1e-19 97.8 138 41.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 9.3e-19 97.4 134 44.0
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 9.3e-19 97.4 138 39.9
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.2e-18 97.1 138 41.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.2e-18 97.1 137 42.3
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.2e-18 97.1 133 42.1
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.6e-18 96.7 141 41.8
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.1e-18 96.3 138 39.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 2.1e-18 96.3 79 62.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-18 96.3 134 37.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.1e-18 96.3 106 50.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.7e-18 95.9 146 43.2
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 3.5e-18 95.5 138 41.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.5e-18 95.5 138 39.9
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.5e-18 95.5 106 50.0
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 3.5e-18 95.5 101 52.5
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 4.6e-18 95.1 141 40.4
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 4.6e-18 95.1 133 39.8
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 6.0e-18 94.7 137 40.1
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 6.0e-18 94.7 137 40.9
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.0e-17 94.0 79 59.5
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.0e-17 94.0 141 41.1
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.8e-17 93.2 137 38.7
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 3.0e-17 92.4 79 59.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.0e-17 92.4 134 38.1
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 5.1e-17 91.7 143 42.0
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.1e-17 91.7 83 55.4
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-16 90.1 95 50.5
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.5e-16 89.4 144 37.5
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 4.3e-16 88.6 127 39.4
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 5.7e-16 88.2 82 53.7
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 5.7e-16 88.2 85 49.4
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 7.4e-16 87.8 138 38.4
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.3e-15 87.0 83 54.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.3e-15 87.0 85 50.6
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.6e-15 86.7 130 40.0
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 3.7e-15 85.5 146 37.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.1e-14 84.0 138 38.4
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.8e-14 83.2 132 35.6
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.1e-14 82.4 134 37.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 4.1e-14 82.0 136 36.8
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 4.1e-14 82.0 137 37.2
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.1e-14 82.0 115 38.3
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.3e-14 81.6 141 33.3
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 6.9e-14 81.3 142 34.5
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 6.9e-14 81.3 141 36.2
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.2e-13 80.5 150 34.0
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.2e-13 80.5 144 32.6
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.0e-13 79.7 134 33.6
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.4e-13 79.0 139 35.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.4e-13 79.0 94 44.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 3.4e-13 79.0 84 44.0
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.9e-13 78.2 84 48.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.0e-12 77.4 136 34.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.0e-12 77.4 139 36.7
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.3e-12 77.0 137 32.8
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 3.8e-12 75.5 134 32.8
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 3.8e-12 75.5 152 34.2
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 8.5e-12 74.3 137 31.4
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 1.1e-11 73.9 41 78.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-11 73.9 41 78.0
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.9e-11 73.2 93 37.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 3.2e-11 72.4 141 33.3
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.7e-10 69.3 93 35.5
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.7e-10 69.3 80 42.5
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 3.6e-10 68.9 41 75.6
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.1e-10 68.2 101 38.6
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 7.9e-10 67.8 84 36.9
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 1.0e-09 67.4 72 50.0
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.0e-09 67.4 145 35.2
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-09 67.0 137 29.9
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.3e-09 66.2 219 26.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.3e-09 66.2 70 50.0
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.5e-08 63.5 137 29.9
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-08 63.5 35 77.1
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-08 63.2 41 63.4
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.0e-08 63.2 35 77.1
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.7e-07 60.1 84 40.5
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.8e-06 56.6 133 27.8
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 9.1e-06 54.3 39 64.1


User provided reference genes

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