Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 6.3e-32 140.2 73 100.0
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 3.6e-11 71.2 71 45.1
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 6.1e-11 70.5 66 47.0
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 1.4e-10 69.3 64 48.4
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 2.3e-10 68.6 61 60.7
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 4.0e-10 67.8 66 47.0
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 4.0e-10 67.8 72 44.4
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 6.8e-10 67.0 59 55.9
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 1.2e-09 66.2 65 47.7
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.5e-09 65.9 66 47.0
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.5e-09 65.9 75 42.7
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 2.0e-09 65.5 61 50.8
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.6e-09 65.1 54 55.6
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 4.4e-09 64.3 70 42.9
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 5.8e-09 63.9 63 52.4
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 5.8e-09 63.9 65 53.8
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 7.5e-09 63.5 61 50.8
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 7.5e-09 63.5 61 50.8
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 7.5e-09 63.5 61 49.2
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.7e-08 62.4 41 68.3
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 2.2e-08 62.0 55 52.7
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 2.2e-08 62.0 41 68.3
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 3.7e-08 61.2 73 43.8
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 4.9e-08 60.8 69 44.9
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 6.4e-08 60.5 41 63.4
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 6.4e-08 60.5 56 50.0
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 6.4e-08 60.5 41 65.9
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 1.1e-07 59.7 65 46.2
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 1.4e-07 59.3 57 47.4
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.4e-07 59.3 41 65.9
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.4e-07 59.3 52 53.8
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 1.9e-07 58.9 67 43.3
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 1.9e-07 58.9 69 43.5
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 1.9e-07 58.9 69 43.5
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 1.9e-07 58.9 69 43.5
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.9e-07 58.9 67 47.8
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 1.9e-07 58.9 41 61.0
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 1.9e-07 58.9 41 61.0
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 2.4e-07 58.5 41 61.0
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 4.1e-07 57.8 40 65.0
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 4.1e-07 57.8 40 60.0
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 4.1e-07 57.8 59 49.2
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 4.1e-07 57.8 44 56.8
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 5.4e-07 57.4 72 40.3
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 5.4e-07 57.4 68 44.1
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 5.4e-07 57.4 66 43.9
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 5.4e-07 57.4 40 65.0
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 5.4e-07 57.4 64 39.1
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 9.2e-07 56.6 55 47.3
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 9.2e-07 56.6 61 45.9
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.2e-06 56.2 43 58.1
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 1.2e-06 56.2 43 58.1
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 1.2e-06 56.2 44 56.8
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 1.2e-06 56.2 44 56.8
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.2e-06 56.2 64 45.3
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 1.6e-06 55.8 70 37.1
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 2.0e-06 55.5 40 60.0
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 2.7e-06 55.1 58 44.8
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 2.7e-06 55.1 71 39.4
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 3.5e-06 54.7 39 61.5
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 3.5e-06 54.7 50 54.0
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 4.6e-06 54.3 62 41.9
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 6.0e-06 53.9 44 50.0
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 6.0e-06 53.9 37 62.2
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 7.8e-06 53.5 42 52.4
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 7.8e-06 53.5 44 47.7


User provided reference genes

Program Settings