Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.7e-135 485.0 258 100.0
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 9.8e-96 354.0 250 72.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.3e-95 353.6 251 73.7
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 6.4e-95 351.3 250 74.8
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 3.2e-94 349.0 235 76.6
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 4.1e-94 348.6 249 71.9
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 2.1e-93 346.3 244 74.6
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 6.0e-93 344.7 256 70.7
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 1.0e-92 344.0 224 77.7
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.3e-92 343.6 248 70.2
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.3e-92 343.6 240 72.5
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.7e-92 343.2 235 76.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 2.3e-92 342.8 235 76.6
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 3.0e-92 342.4 235 76.2
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 3.9e-92 342.0 238 72.7
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 3.9e-92 342.0 248 70.2
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 3.9e-92 342.0 250 70.4
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 5.1e-92 341.7 248 70.6
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.1e-91 340.5 233 74.2
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.1e-91 340.5 249 71.1
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 1.5e-91 340.1 240 73.3
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.5e-91 340.1 244 71.7
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 2.5e-91 339.3 250 70.4
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 2.5e-91 339.3 248 70.6
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 2.5e-91 339.3 246 71.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 3.3e-91 339.0 248 69.8
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.3e-91 338.6 229 74.7
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 5.6e-91 338.2 237 73.8
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 7.3e-91 337.8 233 73.4
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.3e-91 337.8 245 71.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 7.3e-91 337.8 243 73.7
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.8e-90 335.9 249 69.1
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 2.8e-90 335.9 231 75.3
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.8e-90 335.9 245 71.4
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.8e-90 335.9 232 73.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.6e-90 335.5 245 71.4
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 4.7e-90 335.1 233 72.1
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 4.7e-90 335.1 232 73.3
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 8.1e-90 334.3 249 72.3
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.1e-89 334.0 235 71.9
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.1e-89 334.0 245 71.0
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-89 334.0 233 73.8
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.4e-89 333.6 232 72.8
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.8e-89 333.2 248 69.4
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 2.3e-89 332.8 234 73.1
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 3.1e-89 332.4 241 71.4
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 3.1e-89 332.4 233 72.1
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.0e-89 332.0 222 76.1
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 4.0e-89 332.0 238 71.8
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 5.2e-89 331.6 244 69.7
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 5.2e-89 331.6 235 71.5
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 8.9e-89 330.9 233 70.4
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 8.9e-89 330.9 249 69.1
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 8.9e-89 330.9 248 69.4
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 8.9e-89 330.9 233 73.4
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.2e-88 330.5 241 72.6
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.5e-88 330.1 238 72.3
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.6e-88 329.3 244 70.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 3.4e-88 328.9 240 69.6
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 9.9e-88 327.4 238 69.7
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.7e-87 326.6 248 69.4
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.7e-87 326.6 233 71.7
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 2.2e-87 326.2 239 71.5
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 2.2e-87 326.2 239 71.5
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.9e-87 325.9 253 68.4
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.7e-87 325.5 231 71.0
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 6.4e-87 324.7 246 67.5
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 8.4e-87 324.3 247 69.2
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.1e-86 323.9 238 68.1
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.4e-86 323.6 238 67.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.4e-86 322.8 238 68.1
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 2.4e-86 322.8 238 68.1
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.4e-86 322.8 231 69.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 2.4e-86 322.8 255 66.7
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.2e-86 322.4 234 69.2
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 4.1e-86 322.0 249 67.5
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 9.2e-86 320.9 238 67.2
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.6e-85 320.1 221 72.9
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 2.1e-85 319.7 238 66.8
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 3.5e-85 318.9 238 66.4
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.6e-85 318.5 237 69.6
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.3e-84 317.0 232 69.8
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.7e-84 316.6 238 68.5
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.3e-84 316.2 238 66.8
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 3.0e-84 315.8 238 66.4
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 3.0e-84 315.8 238 66.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 3.9e-84 315.5 238 66.0
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 5.1e-84 315.1 222 73.0
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 6.6e-84 314.7 238 66.4
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 8.6e-84 314.3 249 67.1
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 4.3e-83 312.0 232 69.8
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 7.3e-83 311.2 233 71.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.1e-82 309.7 275 61.1
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 3.6e-82 308.9 248 63.7
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 6.2e-82 308.1 237 67.9
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.0e-80 303.1 268 62.3
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 1.4e-78 297.0 292 56.5
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 1.9e-78 296.6 232 64.2
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.3e-76 290.4 198 76.8
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 8.7e-76 287.7 211 71.1
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.5e-75 287.0 210 72.4
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 1.9e-75 286.6 296 54.4
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 6.2e-74 281.6 245 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 3.1e-73 279.3 233 58.8
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.5e-72 276.9 197 73.1
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.0e-72 276.6 189 76.2
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 7.6e-72 274.6 202 70.8
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.4e-70 269.6 235 59.6
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 9.3e-70 267.7 196 71.4
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 8.1e-66 254.6 218 60.1
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 2.4e-65 253.1 232 55.6
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 6.4e-63 245.0 238 51.3
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 4.3e-59 232.3 256 53.9
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 4.3e-59 232.3 153 77.1
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 2.8e-58 229.6 244 52.5
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 4.0e-57 225.7 146 80.1
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 5.5e-54 215.3 173 67.1
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 7.9e-53 211.5 201 60.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.7e-50 202.6 144 71.5
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.4e-46 190.7 209 50.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.5e-46 189.9 173 61.3
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 7.2e-46 188.3 229 46.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.9e-40 168.7 251 40.6
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.5e-38 163.3 252 42.5
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 1.8e-25 120.6 87 72.4
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 4.1e-17 92.8 86 59.3
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 5.9e-16 89.0 99 52.5
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-14 84.7 72 62.5
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 5.2e-12 75.9 57 68.4
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 8.8e-12 75.1 66 60.6
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 9.1e-09 65.1 48 56.2
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.3e-07 61.2 43 60.5
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.7e-07 60.8 87 46.0
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 2.2e-07 60.5 71 43.7


User provided reference genes

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