Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.2e-175 619.8 314 100.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.7e-116 421.8 256 80.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.3e-115 419.5 250 80.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.2e-115 418.3 256 77.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.5e-114 416.8 278 74.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.5e-114 416.8 280 75.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.6e-114 416.0 309 69.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.4e-114 415.6 255 79.6
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.4e-114 415.2 288 71.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.5e-114 414.5 241 82.2
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.5e-114 414.5 241 82.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.8e-114 414.1 254 76.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.7e-113 413.3 243 81.5
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.7e-113 413.3 259 78.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.7e-113 412.1 247 81.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.7e-113 412.1 245 80.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 4.8e-113 411.8 244 80.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 8.3e-113 411.0 249 79.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 8.3e-113 411.0 299 70.9
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.8e-112 409.8 250 79.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-112 409.8 242 81.8
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.8e-112 409.8 243 79.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.1e-112 408.7 242 80.6
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.4e-112 408.3 245 80.0
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.4e-112 408.3 245 80.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.4e-112 408.3 250 80.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 7.0e-112 407.9 246 80.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.1e-112 407.5 243 80.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-111 406.8 250 80.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-111 406.8 242 81.4
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.7e-111 406.0 252 77.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.5e-111 405.6 242 80.6
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 3.5e-111 405.6 271 71.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.5e-111 405.2 254 76.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.5e-111 405.2 242 80.6
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 5.9e-111 404.8 248 78.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.0e-110 404.1 251 75.7
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-110 404.1 261 73.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.0e-110 404.1 261 73.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.0e-110 404.1 261 73.9
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.3e-110 403.7 245 80.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.2e-110 402.9 244 79.1
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.9e-110 402.5 242 78.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.9e-110 402.5 241 80.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.8e-110 402.1 297 66.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.8e-110 402.1 255 74.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.8e-110 402.1 243 79.8
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.8e-110 402.1 255 73.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 5.0e-110 401.7 271 70.5
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 5.0e-110 401.7 242 78.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.5e-110 401.4 242 79.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 8.5e-110 401.0 250 76.8
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 8.5e-110 401.0 294 66.3
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.1e-109 400.6 242 79.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.1e-109 400.6 247 76.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-109 400.2 271 70.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.5e-109 400.2 242 78.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.5e-109 400.2 242 78.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.9e-109 399.8 245 78.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.9e-109 399.8 245 79.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.9e-109 399.8 269 70.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.5e-109 399.4 251 75.3
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.5e-109 399.4 255 75.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.2e-109 399.1 244 78.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 4.2e-109 398.7 243 79.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 4.2e-109 398.7 245 78.4
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.5e-109 398.3 306 66.3
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 5.5e-109 398.3 285 69.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 9.4e-109 397.5 242 79.8
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.1e-108 396.4 254 74.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.1e-108 396.4 243 78.2
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.6e-108 395.6 256 73.0
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 6.1e-108 394.8 265 71.7
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.4e-107 393.7 254 75.2
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.3e-107 392.9 254 71.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 3.0e-107 392.5 254 73.2
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.8e-107 391.0 269 66.9
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 8.8e-107 391.0 269 68.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 8.8e-107 391.0 243 77.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.2e-106 390.6 312 62.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-106 390.6 244 75.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-106 389.8 261 73.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 7.5e-106 387.9 244 75.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.8e-105 386.0 280 68.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.3e-105 384.8 258 72.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-104 384.0 245 74.7
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.8e-104 383.3 250 74.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 9.1e-104 380.9 244 76.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 7.7e-103 377.9 275 70.2
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.7e-102 376.7 248 74.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 6.1e-100 368.2 265 68.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 6.8e-99 364.8 339 57.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.9e-97 359.4 234 75.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.9e-97 359.4 256 69.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 3.2e-96 355.9 295 61.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.2e-96 355.9 376 53.7
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 3.5e-95 352.4 227 76.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.0e-94 349.4 248 68.5
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.0e-94 348.6 283 61.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 2.5e-93 346.3 212 77.8
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 3.3e-93 345.9 249 64.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.7e-92 342.0 249 69.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.0e-91 340.9 241 68.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-88 330.9 213 70.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-87 327.0 247 67.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-86 323.9 213 76.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.9e-85 320.1 244 60.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.6e-84 317.0 248 63.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.4e-80 303.9 190 78.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.2e-80 302.8 212 69.3
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.4e-73 278.1 232 60.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.4e-73 278.1 213 62.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-70 270.8 166 80.1
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.0e-70 269.6 254 52.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 8.1e-68 261.5 177 74.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.0e-66 256.9 165 75.8
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.9e-65 253.1 263 47.9
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.2e-64 249.6 224 58.9
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-63 246.9 251 53.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.3e-62 244.2 159 73.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 8.7e-62 241.5 141 84.4
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.1e-59 234.6 206 60.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.2e-56 223.0 143 76.2
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-55 221.1 298 47.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.6e-55 219.2 243 41.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 9.6e-53 211.5 192 58.3
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-51 208.0 139 71.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.4e-51 207.6 238 46.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 4.0e-51 206.1 132 75.8
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.0e-51 204.9 200 55.0
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.2e-48 196.4 124 73.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.3e-48 194.9 138 71.0
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.6e-44 184.1 125 71.2
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.8e-44 182.6 109 78.0
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.4e-43 181.0 112 73.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.3e-43 179.1 101 77.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-42 177.6 136 64.7
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.5e-42 177.6 136 64.7
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.8e-42 175.6 232 40.5
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.7e-41 174.1 109 75.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 5.1e-38 162.5 164 53.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 4.3e-37 159.5 219 42.0
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.6e-37 158.3 92 81.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.6e-36 157.5 169 48.5
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 9.0e-35 151.8 82 82.9
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 9.0e-35 151.8 90 78.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.2e-33 147.1 242 38.4
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.6e-31 139.8 109 61.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 7.9e-31 138.7 76 82.9
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-29 134.4 78 75.6
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.1e-27 126.7 66 84.8
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.7e-25 120.9 244 33.6
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.4e-24 117.9 56 89.3
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.3e-22 110.5 71 70.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.0e-22 110.2 61 82.0
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.1e-22 109.4 82 64.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.6e-18 97.1 59 74.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.2e-16 90.1 103 45.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 9.4e-16 88.6 105 44.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.7e-15 87.0 114 42.1
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.4e-14 84.7 60 61.7
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 8.8e-14 82.0 47 76.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.5e-10 69.7 102 40.2
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.1e-08 65.1 75 49.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.2e-08 63.5 45 64.4


User provided reference genes

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