Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0210G014 Amborella trichopoda HOM05D000027 ORTHO05D011615 7.0e-24 113.2 62 100.0
ATR0210G035 Amborella trichopoda HOM05D000027 ORTHO05D000500 3.0e-14 81.3 62 71.0
ATR0210G005 Amborella trichopoda HOM05D000027 ORTHO05D000500 1.4e-11 72.4 62 67.7
QL01p028506 Quercus lobata HOM05D000027 ORTHO05D000500 4.9e-09 63.9 54 57.4
MBI14_g16891_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 1.1e-08 62.8 55 50.9
FvH4_5g04400 Fragaria vesca HOM05D000027 ORTHO05D000500 1.4e-08 62.4 55 54.5
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 1.4e-08 62.4 55 54.5
FAN18G1078 Fragaria x ananassa HOM05D000027 ORTHO05D000500 1.4e-08 62.4 55 54.5
FAN18G1842 Fragaria x ananassa HOM05D000027 ORTHO05D000500 1.4e-08 62.4 55 54.5
MBI14_g25122_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 1.9e-08 62.0 55 63.6
MD07G1209400 Malus domestica HOM05D000027 ORTHO05D000500 1.9e-08 62.0 55 52.7
MD07G1210300 Malus domestica HOM05D000027 ORTHO05D000500 1.9e-08 62.0 55 52.7
TAR623G0664 Trochodendron aralioides HOM05D000027 ORTHO05D000500 1.9e-08 62.0 55 54.5
FvH4_7g23700 Fragaria vesca HOM05D000027 ORTHO05D000500 4.1e-08 60.8 55 50.9
FAN01G2907 Fragaria x ananassa HOM05D000027 ORTHO05D000500 4.1e-08 60.8 55 50.9
FAN06G0626 Fragaria x ananassa HOM05D000027 ORTHO05D000500 4.1e-08 60.8 55 50.9
MBI14_g02847_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 4.1e-08 60.8 55 52.7
EL10Ac2g04661 Beta vulgaris HOM05D000027 ORTHO05D000500 5.4e-08 60.5 58 51.7
MD01G1142600 Malus domestica HOM05D000027 ORTHO05D000500 5.4e-08 60.5 55 50.9
MD01G1148700 Malus domestica HOM05D000027 ORTHO05D000500 5.4e-08 60.5 55 50.9
Prupe.4G159100 Prunus persica HOM05D000027 ORTHO05D000500 5.4e-08 60.5 55 50.9
TAR623G0369 Trochodendron aralioides HOM05D000027 ORTHO05D000500 5.4e-08 60.5 55 56.4
AUR62032555 Chenopodium quinoa HOM05D000027 ORTHO05D000500 7.1e-08 60.1 60 56.7
MD01G1143200 Malus domestica HOM05D000027 ORTHO05D000500 7.1e-08 60.1 55 50.9
RcHm_v2.0_Chr1g0368981 Rosa chinensis HOM05D000027 ORTHO05D000500 7.1e-08 60.1 55 52.7
vmacro10205 Vaccinium macrocarpon HOM05D000027 ORTHO05D000500 7.1e-08 60.1 58 51.7
MD01G1144100 Malus domestica HOM05D000027 ORTHO05D000500 9.2e-08 59.7 55 50.9
CiPaw.01G293900 Carya illinoinensis HOM05D000027 ORTHO05D000500 1.2e-07 59.3 55 52.7
MBI14_g02849_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 1.2e-07 59.3 48 58.3
EL10Ac2g04662 Beta vulgaris HOM05D000027 ORTHO05D000500 1.6e-07 58.9 58 51.7
AUR62012178 Chenopodium quinoa HOM05D000027 ORTHO05D000500 1.6e-07 58.9 58 53.4
AUR62012179 Chenopodium quinoa HOM05D000027 ORTHO05D000500 1.6e-07 58.9 58 53.4
AUR62012851 Chenopodium quinoa HOM05D000027 ORTHO05D000500 1.6e-07 58.9 60 51.7
FAN06G0924 Fragaria x ananassa HOM05D000027 ORTHO05D000500 1.6e-07 58.9 55 50.9
THA.LOC104826860 Tarenaya hassleriana HOM05D000027 ORTHO05D000500 2.1e-07 58.5 55 54.5
AUR62022809 Chenopodium quinoa HOM05D000027 ORTHO05D000500 2.7e-07 58.2 60 51.7
AUR62022814 Chenopodium quinoa HOM05D000027 ORTHO05D000500 2.7e-07 58.2 58 51.7
Hma1.2p1_0026F.1_g016710 Hydrangea macrophylla HOM05D000027 ORTHO05D000500 2.7e-07 58.2 55 54.5
Hma1.2p1_0543F.1_g175380 Hydrangea macrophylla HOM05D000027 ORTHO05D000500 2.7e-07 58.2 57 56.1
MD03G1081900 Malus domestica HOM05D000027 ORTHO05D000500 2.7e-07 58.2 60 51.7
AUR62012171 Chenopodium quinoa HOM05D000027 ORTHO05D000500 3.5e-07 57.8 60 51.7
HanXRQChr14g0458621 Helianthus annuus HOM05D000027 ORTHO05D000500 3.5e-07 57.8 60 50.0
Eucgr.J00972 Eucalyptus grandis HOM05D000027 ORTHO05D000500 4.6e-07 57.4 57 50.9
FvH4_7g23660 Fragaria vesca HOM05D000027 ORTHO05D000500 4.6e-07 57.4 55 49.1
MD03G1082200 Malus domestica HOM05D000027 ORTHO05D000500 4.6e-07 57.4 60 51.7
Thecc.10G030200 Theobroma cacao HOM05D000027 ORTHO05D000500 4.6e-07 57.4 55 49.1
TAR623G0144 Trochodendron aralioides HOM05D000027 ORTHO05D000500 4.6e-07 57.4 49 61.2
TAR628G0066 Trochodendron aralioides HOM05D000027 ORTHO05D000500 4.6e-07 57.4 55 49.1
BraA10t45091Z Brassica rapa HOM05D000027 ORTHO05D000500 6.0e-07 57.0 55 54.5
Haze_17158 Corylus avellana HOM05D000027 ORTHO05D000500 6.0e-07 57.0 55 50.9
Dinv34445 Davidia involucrata HOM05D000027 ORTHO05D000500 6.0e-07 57.0 55 50.9
FAN03G2382 Fragaria x ananassa HOM05D000027 ORTHO05D000500 6.0e-07 57.0 55 45.5
Lj9A180T99 Lonicera japonica HOM05D000090 ORTHO05D000083 6.0e-07 57.0 51 58.8
AUR62022808 Chenopodium quinoa HOM05D000027 ORTHO05D000500 7.8e-07 56.6 58 50.0
Ciclev10028437m.g Citrus clementina HOM05D000027 ORTHO05D000500 7.8e-07 56.6 57 49.1
MD01G1143600 Malus domestica HOM05D000027 ORTHO05D000500 7.8e-07 56.6 55 47.3
Manes.01G100300 Manihot esculenta HOM05D000027 ORTHO05D000500 7.8e-07 56.6 55 50.9
Ah.10g036780 Amaranthus hybridus HOM05D000027 ORTHO05D000500 1.0e-06 56.2 55 50.9
Ciclev10028392m.g Citrus clementina HOM05D000027 ORTHO05D000500 1.0e-06 56.2 55 50.9
FvH4_7g23661 Fragaria vesca HOM05D000027 ORTHO05D000500 1.0e-06 56.2 55 43.6
MBI14_g39696_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 1.0e-06 56.2 51 56.9
MD07G1208400 Malus domestica HOM05D000027 ORTHO05D000500 1.0e-06 56.2 55 47.3
MD07G1208800 Malus domestica HOM05D000027 ORTHO05D000500 1.0e-06 56.2 55 49.1
Manes.02G125100 Manihot esculenta HOM05D000027 ORTHO05D000500 1.0e-06 56.2 57 49.1
QL01p028500 Quercus lobata HOM05D000027 ORTHO05D000500 1.0e-06 56.2 60 48.3
Actinidia34436 Actinidia chinensis HOM05D000027 ORTHO05D000500 1.3e-06 55.8 60 51.7
Dinv03929 Davidia involucrata HOM05D000027 ORTHO05D000500 1.3e-06 55.8 57 52.6
Dinv34310 Davidia involucrata HOM05D000027 ORTHO05D000500 1.3e-06 55.8 57 52.6
Thhalv10013513m.g Eutrema salsugineum HOM05D000027 ORTHO05D000500 1.3e-06 55.8 55 52.7
Lj9A178G29 Lonicera japonica HOM05D000090 ORTHO05D000083 1.3e-06 55.8 51 56.9
Lj9C179G0 Lonicera japonica HOM05D000090 ORTHO05D000083 1.3e-06 55.8 59 54.2
MD03G1082400 Malus domestica HOM05D000027 ORTHO05D000500 1.3e-06 55.8 60 50.0
Rhsim09G0169700 Rhododendron simsii HOM05D000027 ORTHO05D000500 1.3e-06 55.8 51 51.0
RcHm_v2.0_Chr1g0368971 Rosa chinensis HOM05D000027 ORTHO05D000500 1.3e-06 55.8 56 48.2
Ciclev10020064m.g Citrus clementina HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 47.3
Eucgr.G03009 Eucalyptus grandis HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 50.9
Eucgr.G03010 Eucalyptus grandis HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 49.1
FAN06G4467 Fragaria x ananassa HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 43.6
Gohir.A05G303100 Gossypium hirsutum HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 47.3
Gohir.A07G101200 Gossypium hirsutum HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 49.1
MD03G1082100 Malus domestica HOM05D000027 ORTHO05D000500 1.7e-06 55.5 60 50.0
Manes.02G124900 Manihot esculenta HOM05D000027 ORTHO05D000500 1.7e-06 55.5 57 47.4
Os07g0241500 Oryza sativa ssp. japonica HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 49.1
RcHm_v2.0_Chr1g0368931 Rosa chinensis HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 45.5
Sp6g37040 Schrenkiella parvula HOM05D000027 ORTHO05D000500 1.7e-06 55.5 55 50.9
Sc11g0007560 Simmondsia chinensis HOM05D000027 ORTHO05D000500 1.7e-06 55.5 58 46.6
BcaNung05966 Brassica carinata HOM05D000027 ORTHO05D000500 2.3e-06 55.1 55 54.5
Gohir.D05G302300 Gossypium hirsutum HOM05D000027 ORTHO05D000500 2.3e-06 55.1 55 47.3
Gorai.009G321100 Gossypium raimondii HOM05D000027 ORTHO05D000500 2.3e-06 55.1 55 47.3
vmacro14570 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 2.3e-06 55.1 55 50.9
C09p70960 Brassica napus HOM05D000027 ORTHO05D000500 3.0e-06 54.7 57 50.9
BolC9t59860H Brassica oleracea HOM05D000027 ORTHO05D000500 3.0e-06 54.7 57 50.9
Carub.0006s0476 Capsella rubella HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 50.9
Ciclev10030245m.g Citrus clementina HOM05D000027 ORTHO05D000500 3.0e-06 54.7 57 47.4
Ciclev10030803m.g Citrus clementina HOM05D000027 ORTHO05D000500 3.0e-06 54.7 58 46.6
Lj2A1071T66 Lonicera japonica HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 50.9
Lj9A180T102 Lonicera japonica HOM05D000090 ORTHO05D000083 3.0e-06 54.7 54 55.6
Lj9A186T109 Lonicera japonica HOM05D000090 ORTHO05D000083 3.0e-06 54.7 54 55.6
MD01G1143100 Malus domestica HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
MD07G1208300 Malus domestica HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
RcHm_v2.0_Chr1g0344701 Rosa chinensis HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
RcHm_v2.0_Chr5g0008431 Rosa chinensis HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
RcHm_v2.0_Chr5g0008941 Rosa chinensis HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
Thecc.10G029600 Theobroma cacao HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
TAR628G0063 Trochodendron aralioides HOM05D000027 ORTHO05D000500 3.0e-06 54.7 55 47.3
CiPaw.13G086300 Carya illinoinensis HOM05D000027 ORTHO05D000500 3.9e-06 54.3 59 47.5
ECA232G3246 Erigeron canadensis HOM05D000027 ORTHO05D000500 3.9e-06 54.3 55 47.3
Gorai.001G113300 Gossypium raimondii HOM05D000027 ORTHO05D000500 3.9e-06 54.3 55 49.1
Hma1.2p1_0026F.1_g016680 Hydrangea macrophylla HOM05D000027 ORTHO05D000500 3.9e-06 54.3 55 50.9
MBI14_g25125_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 3.9e-06 54.3 55 50.9
Prupe.6G008600 Prunus persica HOM05D000027 ORTHO05D000500 3.9e-06 54.3 57 52.6
Prupe.7G149200 Prunus persica HOM05D000100 ORTHO05D000052 3.9e-06 54.3 55 52.7
RcHm_v2.0_Chr4g0431001 Rosa chinensis HOM05D000027 ORTHO05D000500 3.9e-06 54.3 57 49.1
Carub.0005s1298 Capsella rubella HOM05D000027 ORTHO05D000500 5.1e-06 53.9 55 54.5
Haze_17146 Corylus avellana HOM05D000027 ORTHO05D011615 5.1e-06 53.9 49 53.1
Eucgr.G03013 Eucalyptus grandis HOM05D000027 ORTHO05D000500 5.1e-06 53.9 55 47.3
Eucgr.J00973 Eucalyptus grandis HOM05D000027 ORTHO05D000500 5.1e-06 53.9 57 45.6
FvH4_3g37270 Fragaria vesca HOM05D000027 ORTHO05D000500 5.1e-06 53.9 59 47.5
FAN06G0808 Fragaria x ananassa HOM05D000027 ORTHO05D000500 5.1e-06 53.9 55 41.8
FAN06G2204 Fragaria x ananassa HOM05D000027 ORTHO05D000500 5.1e-06 53.9 55 41.8
Lj2C1072T5 Lonicera japonica HOM05D000027 ORTHO05D000500 5.1e-06 53.9 57 47.4
GSVIVG01016427001 Vitis vinifera HOM05D000027 ORTHO05D000500 5.1e-06 53.9 51 51.0
Aa31LG3G4620 Aethionema arabicum HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 49.1
BraA10t45088Z Brassica rapa HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 49.1
CSS0042294 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 47.3
Haze_24220 Corylus avellana HOM05D000027 ORTHO05D000500 6.6e-06 53.5 57 50.9
Haze_24221 Corylus avellana HOM05D000027 ORTHO05D000500 6.6e-06 53.5 57 50.9
Duzib170G0011 Durio zibethinus HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 45.5
Eucgr.G03014 Eucalyptus grandis HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 47.3
Eucgr.L02290 Eucalyptus grandis HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 47.3
Lj9C354G5 Lonicera japonica HOM05D000090 ORTHO05D000083 6.6e-06 53.5 57 52.6
Prupe.2G243500 Prunus persica HOM05D000027 ORTHO05D000500 6.6e-06 53.5 55 43.6
Solyc06g076550.4 Solanum lycopersicum HOM05D000027 ORTHO05D000500 6.6e-06 53.5 57 47.4
Sopen06g032940 Solanum pennellii HOM05D000027 ORTHO05D000500 6.6e-06 53.5 57 47.4
Actinidia02378 Actinidia chinensis HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 49.1
C09p70930 Brassica napus HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 49.1
BolC9t59857H Brassica oleracea HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 49.1
Ciclev10001065m.g Citrus clementina HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 45.5
Eucgr.G03007 Eucalyptus grandis HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 47.3
Eucgr.H01240 Eucalyptus grandis HOM05D000100 ORTHO05D000052 8.6e-06 53.1 50 52.0
FvH4_7g23680 Fragaria vesca HOM05D000027 ORTHO05D000500 8.6e-06 53.1 58 41.4
MBI14_g25118_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 54.5
MD00G1075200 Malus domestica HOM05D000027 ORTHO05D000500 8.6e-06 53.1 59 47.5
MD05G1085700 Malus domestica HOM05D000090 ORTHO05D000083 8.6e-06 53.1 60 50.0
Nn3g19871 Nelumbo nucifera HOM05D000027 ORTHO05D000500 8.6e-06 53.1 57 52.6
Os03g0824600 Oryza sativa ssp. japonica HOM05D000027 ORTHO05D000500 8.6e-06 53.1 60 50.0
QL04p049342 Quercus lobata HOM05D000027 ORTHO05D000500 8.6e-06 53.1 57 43.9
Thecc.09G312800 Theobroma cacao HOM05D000027 ORTHO05D000500 8.6e-06 53.1 55 49.1
Thecc.10G030300 Theobroma cacao HOM05D000027 ORTHO05D000500 8.6e-06 53.1 58 46.6


User provided reference genes

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