Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0210G010 Amborella trichopoda HOM05D005780 ORTHO05D007289 3.2e-181 638.3 316 100.0
TAR623G0797 Trochodendron aralioides HOM05D005780 ORTHO05D007289 1.2e-82 310.8 215 69.8
Dinv16281 Davidia involucrata HOM05D005780 ORTHO05D007289 9.9e-82 307.8 215 67.4
Nn2g13534 Nelumbo nucifera HOM05D005780 ORTHO05D007289 7.8e-79 298.1 205 66.8
GSVIVG01016433001 Vitis vinifera HOM05D005780 ORTHO05D007289 8.7e-78 294.7 214 66.8
Lj8A74T69 Lonicera japonica HOM05D005780 ORTHO05D007289 1.5e-77 293.9 205 67.8
Aqoxy1G00787 Aquilegia oxysepala HOM05D005780 ORTHO05D007289 1.9e-77 293.5 215 66.5
Actinidia02380 Actinidia chinensis HOM05D005780 ORTHO05D007289 1.6e-76 290.4 205 68.8
Cfa001395 Carpinus fangiana HOM05D005780 ORTHO05D007289 6.2e-76 288.5 214 65.4
Manes.07G122900 Manihot esculenta HOM05D005780 ORTHO05D007289 1.1e-75 287.7 209 66.5
PSO339G4705 Papaver somniferum HOM05D005780 ORTHO05D007289 1.4e-75 287.3 215 63.3
Cpa.g.sc19.252 Carica papaya HOM05D005780 ORTHO05D007289 5.3e-75 285.4 236 61.4
Oeu018986.1 Olea europaea HOM05D005780 ORTHO05D007289 6.9e-75 285.0 206 67.0
PSO384G4288 Papaver somniferum HOM05D005780 ORTHO05D007289 6.9e-75 285.0 215 63.3
Hund13812 Selenicereus undatus HOM05D005780 ORTHO05D007289 2.6e-74 283.1 237 58.2
Cc02_g07200 Coffea canephora HOM05D005780 ORTHO05D007289 4.5e-74 282.3 205 64.9
MBI14_g02858_MAGBIO Magnolia biondii HOM05D005780 ORTHO05D007289 5.8e-74 282.0 219 68.0
Gohir.A10G226266 Gossypium hirsutum HOM05D005780 ORTHO05D007289 9.9e-74 281.2 206 63.6
CANSAT56G3446 Cannabis sativa HOM05D005780 ORTHO05D007289 1.3e-73 280.8 217 61.3
Gohir.D10G238600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 2.2e-73 280.0 215 61.9
Gorai.011G274500 Gossypium raimondii HOM05D005780 ORTHO05D007289 2.9e-73 279.6 215 61.9
Nitab4.5_0002822g0060 Nicotiana tabacum HOM05D005780 ORTHO05D007289 3.8e-73 279.3 206 66.0
Potri.008G062100 Populus trichocarpa HOM05D005780 ORTHO05D007289 3.8e-73 279.3 206 65.5
Eucgr.J00968 Eucalyptus grandis HOM05D005780 ORTHO05D007289 4.9e-73 278.9 214 62.6
Atru.chr12.271 Acer truncatum HOM05D005780 ORTHO05D007289 6.4e-73 278.5 205 66.3
Gohir.A10G226300 Gossypium hirsutum HOM05D005780 ORTHO05D007289 8.4e-73 278.1 222 59.9
Ciclev10032579m.g Citrus clementina HOM05D005780 ORTHO05D007289 1.9e-72 276.9 215 61.9
Prupe.2G243100 Prunus persica HOM05D005780 ORTHO05D007289 1.9e-72 276.9 205 63.4
Thecc.10G030600 Theobroma cacao HOM05D005780 ORTHO05D007289 4.2e-72 275.8 215 62.3
Phvul.001G238600 Phaseolus vulgaris HOM05D005780 ORTHO05D007289 5.4e-72 275.4 216 61.1
Haze_17154 Corylus avellana HOM05D005780 ORTHO05D007289 7.1e-72 275.0 250 56.4
arahy.Tifrunner.gnm1.ann1.BF464R Arachis hypogaea HOM05D005780 ORTHO05D007289 1.6e-71 273.9 233 57.5
MSTRG.8290 Avicennia marina HOM05D005780 ORTHO05D007289 1.6e-71 273.9 205 64.9
Lalb_Chr15g0084461 Lupinus albus HOM05D005780 ORTHO05D007289 1.6e-71 273.9 209 63.2
Sc14g0004720 Simmondsia chinensis HOM05D005780 ORTHO05D007289 2.7e-71 273.1 205 64.4
THA.LOC104823134 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 2.7e-71 273.1 213 63.4
MSTRG.251 Avicennia marina HOM05D005780 ORTHO05D007289 3.5e-71 272.7 205 64.4
Glyma.18G032000 Glycine max HOM05D005780 ORTHO05D007289 3.5e-71 272.7 205 63.4
Lj6g0000720 Lotus japonicus HOM05D005780 ORTHO05D007289 3.5e-71 272.7 209 62.2
CAN.G115.6 Capsicum annuum HOM05D005780 ORTHO05D007289 4.6e-71 272.3 205 63.9
HanXRQChr07g0202011 Helianthus annuus HOM05D005780 ORTHO05D007289 6.0e-71 271.9 205 63.4
Gohir.A13G017500 Gossypium hirsutum HOM05D005780 ORTHO05D007289 1.0e-70 271.2 206 63.6
Solyc03g079850.4 Solanum lycopersicum HOM05D005780 ORTHO05D007289 1.0e-70 271.2 205 63.9
Sopen03g027310 Solanum pennellii HOM05D005780 ORTHO05D007289 1.0e-70 271.2 205 63.9
SalBow6G1112 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.8e-70 270.4 220 62.3
SalBow6G4646 Salvia bowleyana HOM05D005780 ORTHO05D007289 1.8e-70 270.4 220 62.3
Glyma.11G225300 Glycine max HOM05D005780 ORTHO05D007289 3.9e-70 269.2 205 62.0
Mapoly0001s0310 Marchantia polymorpha HOM05D005780 ORTHO05D007289 3.9e-70 269.2 205 63.4
Gohir.D13G018600 Gossypium hirsutum HOM05D005780 ORTHO05D007289 8.7e-70 268.1 206 63.1
Pp3c19_5660 Physcomitrium patens HOM05D005780 ORTHO05D007289 8.7e-70 268.1 206 64.1
VMungo1383G0024 Vigna mungo HOM05D005780 ORTHO05D007289 8.7e-70 268.1 216 60.6
HanXRQChr09g0246921 Helianthus annuus HOM05D005780 ORTHO05D007289 1.1e-69 267.7 219 61.2
Rhsim09G0170100 Rhododendron simsii HOM05D005780 ORTHO05D007289 1.5e-69 267.3 224 59.4
ECA238G2932 Erigeron canadensis HOM05D005780 ORTHO05D007289 2.5e-69 266.5 206 61.7
Psat5g125560 Pisum sativum HOM05D005780 ORTHO05D007289 5.6e-69 265.4 209 62.2
MD01G1142100 Malus domestica HOM05D005780 ORTHO05D007289 9.6e-69 264.6 205 62.9
TPR.G33709 Trifolium pratense HOM05D005780 ORTHO05D007289 9.6e-69 264.6 229 58.1
Lsat_1_v5_gn_2_117001 Lactuca sativa HOM05D005780 ORTHO05D007289 1.6e-68 263.8 205 63.4
FvH4_7g23620 Fragaria vesca HOM05D005780 ORTHO05D007289 2.8e-68 263.1 205 61.5
Sp6g36970 Schrenkiella parvula HOM05D005780 ORTHO05D007289 2.8e-68 263.1 205 60.0
Lsat_1_v5_gn_9_63040 Lactuca sativa HOM05D005780 ORTHO05D007289 4.8e-68 262.3 206 64.1
Sabra08G0045700 Salix brachista HOM05D005780 ORTHO05D007289 4.8e-68 262.3 236 56.8
FAN03G3464 Fragaria x ananassa HOM05D005780 ORTHO05D007289 6.2e-68 261.9 205 61.5
Ca_17131_v3 Cicer arietinum L. HOM05D005780 ORTHO05D007289 8.1e-68 261.5 209 61.2
PGR044G2210 Punica granatum HOM05D005780 ORTHO05D007289 8.1e-68 261.5 205 62.0
RcHm_v2.0_Chr1g0368881 Rosa chinensis HOM05D005780 ORTHO05D007289 1.8e-67 260.4 205 61.5
COL.COLO4_25579 Corchorus olitorius HOM05D005780 ORTHO05D007289 2.4e-67 260.0 242 54.1
Sed0012096 Sechium edule HOM05D005780 ORTHO05D007289 4.0e-67 259.2 205 61.0
Migut.F01304 Erythranthe guttata HOM05D005780 ORTHO05D007289 9.0e-67 258.1 206 63.1
unitig_22.g6680 Utricularia gibba HOM05D005780 ORTHO05D007289 9.0e-67 258.1 205 61.5
vmacro10198 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 9.0e-67 258.1 258 51.6
Hma1.2p1_0039F.1_g024940 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 1.2e-66 257.7 180 66.7
Hma1.2p1_0039F.1_g024930 Hydrangea macrophylla HOM05D005780 ORTHO05D007289 1.5e-66 257.3 189 64.6
CsaV3_6G001510 Cucumis sativus L. HOM05D005780 ORTHO05D007289 2.0e-66 256.9 215 59.5
BcaC06g32303 Brassica carinata HOM05D005780 ORTHO05D007289 2.6e-66 256.5 205 58.5
C09p70870 Brassica napus HOM05D005780 ORTHO05D007289 2.6e-66 256.5 205 58.5
BolC9t59846H Brassica oleracea HOM05D005780 ORTHO05D007289 2.6e-66 256.5 205 58.5
Thhalv10014411m.g Eutrema salsugineum HOM05D005780 ORTHO05D007289 2.6e-66 256.5 209 57.9
ECA232G1234 Erigeron canadensis HOM05D005780 ORTHO05D007289 3.4e-66 256.1 205 61.0
AL6G15850 Arabidopsis lyrata HOM05D005780 ORTHO05D007289 7.6e-66 255.0 205 58.0
MD07G1207800 Malus domestica HOM05D005780 ORTHO05D007289 1.3e-65 254.2 205 62.4
Zm00001eb289450 Zea mays HOM05D005780 ORTHO05D007289 2.2e-65 253.4 206 64.1
arahy.Tifrunner.gnm1.ann1.Y0QE0E Arachis hypogaea HOM05D005780 ORTHO05D007289 2.9e-65 253.1 276 48.6
Peaxi162Scf00140g01357 Petunia axillaris HOM05D005780 ORTHO05D007289 4.9e-65 252.3 182 66.5
Carub.0006s0481 Capsella rubella HOM05D005780 ORTHO05D007289 8.4e-65 251.5 205 58.0
CiPaw.01G293600 Carya illinoinensis HOM05D005780 ORTHO05D007289 1.4e-64 250.8 187 65.8
Medtr3g069620 Medicago truncatula HOM05D005780 ORTHO05D007289 1.4e-64 250.8 233 55.8
DCAR_011758 Daucus carota HOM05D005780 ORTHO05D007289 4.2e-64 249.2 215 57.7
Aa31LG11G6960 Aethionema arabicum HOM05D005780 ORTHO05D007289 9.3e-64 248.1 221 54.8
BraA10t45082Z Brassica rapa HOM05D005780 ORTHO05D007289 9.3e-64 248.1 229 53.7
AagrBONN_evm.TU.Sc2ySwM_362.219 Anthoceros agrestis HOM05D005780 ORTHO05D007289 1.2e-63 247.7 205 58.0
Duzib114G0105 Durio zibethinus HOM05D005780 ORTHO05D007289 3.0e-62 243.0 187 62.0
Eucgr.L02372 Eucalyptus grandis HOM05D005780 ORTHO05D007289 5.1e-62 242.3 187 63.1
Zm00001eb412440 Zea mays HOM05D005780 ORTHO05D007289 1.9e-61 240.4 207 60.9
HPP92_015198 Vanilla planifolia HOM05D005780 ORTHO05D007289 2.5e-61 240.0 211 60.7
Gorai.013G020600 Gossypium raimondii HOM05D005780 ORTHO05D007289 4.3e-61 239.2 191 59.7
QL08p062087 Quercus lobata HOM05D005780 ORTHO05D007289 7.4e-61 238.4 190 60.5
SMO134G0044 Selaginella moellendorffii HOM05D005780 ORTHO05D007289 7.4e-61 238.4 208 57.7
Ah.16g102800 Amaranthus hybridus HOM05D005780 ORTHO05D007289 2.1e-60 236.9 193 61.1
EL10Ac2g04667 Beta vulgaris HOM05D005780 ORTHO05D007289 6.9e-59 231.9 205 56.1
Eucgr.I02190 Eucalyptus grandis HOM05D005780 ORTHO05D007289 2.0e-58 230.3 187 61.0
THA.LOC104816572 Tarenaya hassleriana HOM05D005780 ORTHO05D007289 3.8e-57 226.1 187 57.8
Duzib128G1582 Durio zibethinus HOM05D005780 ORTHO05D007289 8.4e-57 224.9 225 53.8
Nitab4.5_0000399g0020 Nicotiana tabacum HOM05D005780 ORTHO05D007289 5.5e-56 222.2 243 50.6
Pp3c22_3300 Physcomitrium patens HOM05D005780 ORTHO05D007289 2.3e-54 216.9 205 56.1
Dinv34450 Davidia involucrata HOM05D005780 ORTHO05D007289 3.0e-54 216.5 155 66.5
FAN06G3968 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.2e-52 210.3 229 49.3
Sed0009457 Sechium edule HOM05D005780 ORTHO05D007289 3.7e-52 209.5 164 61.0
Zm00001eb226980 Zea mays HOM05D005780 ORTHO05D007289 3.7e-52 209.5 193 58.0
SGA_v2.0_scaffold76G25041 Striga asiatica HOM05D005780 ORTHO05D007289 4.1e-51 206.1 158 62.7
Cre10.g457450 Chlamydomonas reinhardtii HOM05D005780 ORTHO05D007289 5.0e-49 199.1 227 46.7
vmacro07012 Vaccinium macrocarpon HOM05D005780 ORTHO05D007289 3.2e-48 196.4 219 49.3
MELO3C008260.2 Cucumis melo HOM05D005780 ORTHO05D007289 3.9e-46 189.5 152 59.9
CARHR207290 Cardamine hirsuta HOM05D005780 ORTHO05D007289 1.3e-44 184.5 187 47.6
MCO05G626 Micromonas commoda HOM05D005780 ORTHO05D007289 1.4e-43 181.0 245 41.6
AT5G05930 Arabidopsis thaliana HOM05D005780 ORTHO05D007289 1.2e-42 177.9 156 53.8
PRCOL_00006562 Prasinoderma coloniale HOM05D005780 ORTHO05D007289 1.5e-42 177.6 234 43.6
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 8.5e-41 171.8 152 55.9
ClCG11G006480 Citrullus lanatus HOM05D005780 ORTHO05D007289 4.2e-40 169.5 249 40.2
Actinidia13899 Actinidia chinensis HOM05D005780 ORTHO05D007289 5.1e-38 162.5 187 49.7
CDE02G3808 Ceratophyllum demersum HOM05D005780 ORTHO05D007289 2.0e-37 160.6 126 65.9
FAN01G2814 Fragaria x ananassa HOM05D005780 ORTHO05D007289 4.7e-31 139.4 104 62.5
FAN06G4825 Fragaria x ananassa HOM05D005780 ORTHO05D007289 2.2e-28 130.6 118 55.1
FAN10G2246 Fragaria x ananassa HOM05D005780 ORTHO05D007289 1.4e-27 127.9 118 54.2
AUR62022803 Chenopodium quinoa HOM05D005780 ORTHO05D007289 2.0e-26 124.0 205 37.1
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 3.5e-26 123.2 177 37.3
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 1.3e-25 121.3 126 53.2
AUR62012166 Chenopodium quinoa HOM05D005780 ORTHO05D007289 2.5e-24 117.1 205 36.1
DCAR_024851 Daucus carota HOM05D005780 ORTHO05D007289 4.2e-24 116.3 89 62.9
Zm00001eb137070 Zea mays HOM05D005780 ORTHO05D007289 4.1e-19 99.8 71 69.0
SEGI_25575 Sequoiadendron giganteum HOM05D005780 ORTHO05D007289 1.5e-13 81.3 73 53.4
Rhsim03G0138300 Rhododendron simsii HOM05D005780 ORTHO05D007289 5.9e-10 69.3 95 42.1
Os05g0453500 Oryza sativa ssp. japonica HOM05D005780 ORTHO05D007289 5.0e-09 66.2 48 70.8
Zm00001eb049210 Zea mays HOM05D001870 ORTHO05D001797 1.2e-07 61.6 42 73.8
Zm00001eb265170 Zea mays HOM05D001689 ORTHO05D001643 1.2e-07 61.6 42 73.8
ClCG11G006490 Citrullus lanatus HOM05D005780 ORTHO05D007289 8.9e-06 55.5 43 62.8


User provided reference genes

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