Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.9e-145 518.1 254 100.0
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 6.8e-65 251.5 151 81.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 2.2e-47 193.4 233 48.9
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.0e-45 186.8 249 46.6
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.3e-44 183.3 248 46.4
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.9e-44 182.6 242 44.6
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.9e-44 182.6 250 46.0
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 8.6e-44 181.4 243 45.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-43 181.0 248 44.8
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.9e-43 180.3 250 43.2
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.6e-43 178.7 249 45.4
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 6.8e-41 171.8 246 44.3
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 8.9e-41 171.4 249 44.2
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 8.9e-41 171.4 249 43.8
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 8.9e-41 171.4 241 42.7
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 8.9e-41 171.4 248 44.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.6e-40 169.9 249 43.8
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 7.5e-40 168.3 243 44.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 4.9e-39 165.6 246 42.3
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 8.3e-39 164.9 242 42.6
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.1e-38 164.5 243 43.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-38 164.5 251 39.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.4e-38 164.1 242 40.9
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.4e-38 164.1 255 43.5
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 2.4e-38 163.3 251 41.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 3.2e-38 162.9 248 42.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 4.1e-38 162.5 243 42.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-37 161.0 242 42.1
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.5e-37 159.5 273 38.1
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 4.6e-37 159.1 246 39.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 4.6e-37 159.1 243 44.9
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-36 157.5 244 41.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.1e-36 155.6 245 40.8
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 6.6e-36 155.2 248 40.3
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-35 154.1 238 44.1
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.5e-35 154.1 238 44.1
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.5e-35 154.1 246 41.9
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-35 153.7 204 47.5
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-35 153.7 204 47.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 5.6e-35 152.1 212 42.5
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.5e-35 151.4 244 40.2
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.1e-34 150.2 267 37.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.1e-34 150.2 243 40.7
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.1e-34 150.2 246 39.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.8e-34 149.8 244 38.5
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-34 149.8 238 43.3
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.8e-34 149.8 237 40.5
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.6e-34 149.4 243 39.1
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 4.7e-34 149.1 249 37.8
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 6.2e-34 148.7 246 40.7
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 6.2e-34 148.7 253 38.3
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.2e-34 148.7 248 40.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 8.1e-34 148.3 239 40.2
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-33 147.9 187 44.9
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.1e-33 147.9 243 39.5
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.4e-33 147.5 244 39.3
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-33 146.7 220 42.3
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.1e-33 146.4 217 41.9
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 3.1e-33 146.4 243 38.7
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.0e-33 146.0 248 38.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 4.0e-33 146.0 245 38.4
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.0e-33 146.0 244 39.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-33 145.6 218 41.7
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.8e-33 145.2 236 38.6
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-33 144.8 218 41.7
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 8.9e-33 144.8 246 37.4
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 8.9e-33 144.8 250 38.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.2e-32 144.4 239 38.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.0e-32 143.7 245 38.4
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.0e-32 143.7 241 38.2
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.4e-32 142.5 240 39.6
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 4.4e-32 142.5 243 38.7
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 9.9e-32 141.4 253 38.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.3e-31 141.0 209 39.7
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 1.7e-31 140.6 249 37.8
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.9e-31 139.8 251 37.8
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.8e-31 139.4 239 37.7
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.9e-31 139.0 249 37.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.4e-30 137.5 241 36.5
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.9e-30 137.1 270 35.9
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 2.4e-30 136.7 243 36.2
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 7.1e-30 135.2 247 38.5
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 9.2e-30 134.8 209 39.7
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 9.2e-30 134.8 287 36.9
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-29 134.4 220 40.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.2e-29 134.4 242 36.4
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.6e-29 134.0 247 36.8
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.6e-29 134.0 239 38.1
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 2.7e-29 133.3 234 37.2
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.7e-29 133.3 297 33.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 3.5e-29 132.9 220 40.5
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.5e-29 132.9 246 35.8
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-29 132.1 209 40.7
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 6.0e-29 132.1 238 35.7
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 6.0e-29 132.1 248 36.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.3e-28 130.2 254 35.8
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.9e-28 129.4 233 36.5
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.6e-28 128.6 241 39.4
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 6.6e-28 128.6 245 34.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 1.9e-27 127.1 204 38.7
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.3e-27 126.3 237 36.7
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.3e-27 126.3 241 36.5
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 7.3e-27 125.2 228 36.0
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 7.3e-27 125.2 237 35.4
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 7.3e-27 125.2 247 34.8
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.6e-26 124.0 247 38.5
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.1e-26 123.6 259 36.7
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 2.1e-26 123.6 236 36.0
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 6.2e-26 122.1 214 37.9
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 8.1e-26 121.7 236 35.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.1e-25 121.3 238 34.0
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.8e-25 120.6 204 38.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 8.9e-25 118.2 237 34.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.0e-24 117.1 243 33.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.0e-24 117.1 206 39.3
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.0e-24 117.1 212 35.4
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-24 114.8 178 39.3
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-23 114.4 215 36.7
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-23 114.4 239 36.4
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-22 110.9 238 31.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-22 110.9 240 32.9
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 3.2e-22 109.8 233 33.9
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.6e-21 107.5 245 33.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 7.8e-21 105.1 251 37.5
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 5.6e-19 99.0 113 50.4
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-19 98.6 174 37.9
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.1e-18 97.1 234 29.1
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 3.6e-18 96.3 109 48.6
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.6e-18 96.3 239 32.2
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 4.8e-18 95.9 233 32.2
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.1e-17 94.7 170 31.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.4e-17 94.4 162 40.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.1e-17 93.2 188 38.3
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-16 89.7 192 33.3
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 9.9e-16 88.2 98 52.0
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.9e-15 86.7 160 38.1
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 9.3e-14 81.6 177 33.3
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.7e-13 80.1 112 40.2
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.7e-13 80.1 183 33.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.6e-08 63.5 38 81.6
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.6e-08 63.5 38 81.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 4.5e-08 62.8 61 45.9
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.4e-06 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-06 56.2 69 43.5
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.5e-06 55.8 97 36.1
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 7.1e-06 55.5 69 43.5


User provided reference genes

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