Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 9.9e-58 226.5 108 100.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.1e-47 192.2 108 80.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.3e-46 189.5 108 81.5
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 8.7e-46 186.8 108 79.6
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 3.3e-45 184.9 105 81.0
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.8e-44 181.8 104 79.8
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 6.2e-44 180.6 105 79.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 79.8
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 79.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.4e-43 179.5 106 79.2
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 77.1
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 79.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 78.1
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.4e-43 178.7 103 79.6
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.1e-43 178.3 108 77.8
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 4.0e-43 177.9 104 77.9
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 5.3e-43 177.6 106 78.3
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 5.3e-43 177.6 103 78.6
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 6.9e-43 177.2 105 76.2
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.9e-43 177.2 105 77.1
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 6.9e-43 177.2 106 76.4
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.9e-43 177.2 103 78.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 6.9e-43 177.2 105 76.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 9.0e-43 176.8 106 78.3
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.2e-42 176.4 111 75.7
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 78.6
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 77.1
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 76.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 76.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 108 75.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 76.9
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 75.2
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 2.6e-42 175.3 104 77.9
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.4e-42 174.9 105 75.2
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.5e-42 174.5 105 76.2
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 4.5e-42 174.5 106 74.5
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 76.2
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 76.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 76.9
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 75.2
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 76.2
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 76.2
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.0e-41 173.3 104 76.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 75.2
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 75.2
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 76.2
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.9
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 76.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.7e-41 172.6 105 75.2
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 76.0
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.7e-41 172.6 106 77.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.2e-41 172.2 104 75.0
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 2.9e-41 171.8 108 75.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 75.2
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 104 76.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.8e-41 171.4 106 74.5
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 3.8e-41 171.4 106 74.5
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 75.2
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 76.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 75.2
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 74.3
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 4.9e-41 171.0 108 74.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 76.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 6.5e-41 170.6 104 76.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 74.3
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 75.2
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 75.2
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 74.3
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 105 74.3
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 8.4e-41 170.2 104 76.0
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 8.4e-41 170.2 103 75.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.1e-40 169.9 105 73.3
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.4e-40 169.5 103 73.8
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.4e-40 169.5 106 70.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.4e-40 169.5 105 73.3
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 74.3
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 74.3
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 74.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.5e-40 168.7 99 78.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-40 168.7 105 71.4
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.5e-40 168.7 103 73.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 2.5e-40 168.7 106 72.6
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 3.2e-40 168.3 105 73.3
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.2e-40 168.3 96 79.2
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.2e-40 168.3 107 74.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.2e-40 167.9 103 72.8
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 74.3
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.2e-40 167.9 105 72.4
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 5.5e-40 167.5 105 72.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.5e-40 167.5 105 72.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 5.5e-40 167.5 107 71.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 7.1e-40 167.2 104 73.1
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 105 71.4
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 105 70.5
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 9.3e-40 166.8 104 72.1
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.3e-40 166.8 99 76.8
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 9.3e-40 166.8 103 72.8
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 71.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 71.4
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 71.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 103 73.8
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.2e-39 166.4 104 72.1
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 70.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.2e-39 166.4 113 69.9
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.6e-39 166.0 103 71.8
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.6e-39 166.0 106 72.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 69.5
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 70.5
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 69.5
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.6e-39 164.5 105 71.4
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.6e-39 164.5 104 72.1
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 6.0e-39 164.1 105 72.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 6.0e-39 164.1 90 81.1
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 6.0e-39 164.1 106 69.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.9e-39 163.7 105 69.5
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.9e-39 163.7 105 68.6
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 7.9e-39 163.7 105 68.6
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.0e-38 163.3 105 68.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 2.3e-38 162.2 103 69.9
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.3e-38 162.2 104 72.1
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 3.9e-38 161.4 105 66.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 5.1e-38 161.0 102 72.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 5.1e-38 161.0 102 72.5
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 5.1e-38 161.0 103 68.9
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 109 69.7
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.7e-38 160.6 105 67.6
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-37 159.8 95 76.8
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 70.5
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.7e-37 157.5 105 69.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 8.2e-36 153.7 167 50.3
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.6e-34 148.7 88 73.9
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.2e-32 141.7 106 65.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 5.5e-32 141.0 95 66.3
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.6e-31 138.3 103 64.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.6e-31 138.3 102 63.7
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 6.7e-30 134.0 82 75.6
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 6.7e-30 134.0 100 63.0
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 6.7e-30 134.0 87 72.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.7e-28 129.4 69 79.7
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.8e-28 128.6 97 54.6
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 8.2e-28 127.1 75 72.0
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 9.1e-27 123.6 100 59.0
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-25 119.8 80 67.5
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 4.7e-23 111.3 67 77.6
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 4.4e-21 104.8 63 79.4
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.8e-20 102.1 73 65.8
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.8e-19 99.4 63 76.2
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.8e-19 99.4 69 66.7
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 6.9e-19 97.4 60 78.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.0e-18 95.9 69 66.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 7.7e-18 94.0 59 76.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 5.0e-17 91.3 57 75.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.0e-17 91.3 92 42.4
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 5.5e-16 87.8 63 65.1
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 7.2e-16 87.4 90 42.2
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.2e-15 86.7 49 75.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.6e-15 86.3 55 72.7
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.8e-14 80.5 48 77.1
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.1e-13 80.1 54 64.8
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.5e-13 79.7 53 62.3
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 4.4e-13 78.2 65 60.0
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.1e-11 73.6 45 68.9
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 8.8e-06 53.9 33 75.8


User provided reference genes

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