Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 2.5e-267 925.2 614 100.0
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 9.8e-110 401.7 586 57.2
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 7.0e-108 395.6 577 51.8
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.6e-107 394.4 575 54.3
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.3e-106 391.3 581 59.7
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.5e-105 387.9 580 55.5
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.6e-102 377.1 609 44.8
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 3.4e-102 376.7 610 42.1
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 9.8e-102 375.2 594 41.8
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 8.3e-101 372.1 605 48.6
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 8.3e-101 372.1 577 55.1
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.1e-100 371.7 587 57.6
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 3.9e-98 363.2 594 53.4
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 6.6e-98 362.5 592 55.1
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 8.6e-98 362.1 599 43.9
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 8.6e-98 362.1 577 56.0
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 1.9e-97 360.9 580 54.8
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.2e-96 358.2 602 53.0
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.6e-96 357.8 586 54.3
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 1.6e-96 357.8 611 55.3
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 4.7e-96 356.3 625 52.2
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.2e-96 355.9 599 36.1
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 1.8e-95 354.4 577 52.7
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 3.1e-95 353.6 577 50.8
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 4.0e-95 353.2 579 59.1
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 5.2e-95 352.8 525 54.5
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 6.8e-95 352.4 582 53.3
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 4.4e-94 349.7 597 56.4
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 1.7e-93 347.8 519 50.7
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 1.7e-93 347.8 572 42.7
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 2.9e-93 347.1 583 54.0
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 6.4e-93 345.9 522 56.9
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 1.4e-92 344.7 609 48.9
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 7.1e-92 342.4 591 54.7
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 9.2e-92 342.0 575 53.4
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 1.6e-91 341.3 595 42.5
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 2.1e-91 340.9 582 53.3
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 2.1e-91 340.9 519 59.0
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 3.5e-91 340.1 584 47.1
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 1.0e-90 338.6 579 49.9
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 1.7e-90 337.8 576 49.7
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.7e-90 337.8 587 52.6
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 3.9e-90 336.7 582 47.3
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 6.6e-90 335.9 599 52.9
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 8.6e-90 335.5 592 45.1
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 7.3e-89 332.4 602 43.5
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 9.5e-89 332.0 573 55.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 1.1e-87 328.6 602 54.5
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.4e-87 328.2 577 55.3
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 3.1e-87 327.0 585 51.5
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 8.9e-87 325.5 578 52.1
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 8.9e-87 325.5 573 56.2
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 4.4e-86 323.2 577 46.8
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 5.8e-86 322.8 586 54.6
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 5.8e-86 322.8 593 49.2
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.3e-85 321.6 584 51.7
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 1.7e-85 321.2 582 47.4
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.4e-84 318.2 584 49.8
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.4e-84 318.2 584 49.8
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 1.4e-84 318.2 612 47.1
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 5.4e-84 316.2 583 48.7
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 5.4e-84 316.2 583 48.7
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 5.4e-84 316.2 573 54.8
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 7.1e-84 315.8 530 54.9
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.2e-83 315.1 600 52.3
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 1.7e-82 311.2 584 49.5
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 2.3e-82 310.8 582 42.3
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 3.6e-80 303.5 572 54.4
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 3.6e-80 303.5 577 54.2
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 4.0e-79 300.1 523 54.7
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 5.2e-79 299.7 586 47.6
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 2.0e-78 297.7 550 58.4
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 4.4e-78 296.6 578 47.9
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 1.9e-76 291.2 608 43.9
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 2.4e-76 290.8 589 52.1
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 2.1e-75 287.7 589 52.3
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 7.8e-75 285.8 606 45.7
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.7e-74 284.6 580 51.0
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 1.9e-73 281.2 371 53.6
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 2.1e-72 277.7 536 48.1
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 3.1e-71 273.9 502 56.0
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 3.2e-68 263.8 572 45.5
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 1.0e-66 258.8 586 50.3
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 5.1e-66 256.5 387 47.5
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 1.5e-65 255.0 358 52.2
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.3e-64 251.9 587 45.3
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 6.2e-64 249.6 572 49.7
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 1.8e-63 248.1 577 51.0
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 3.1e-63 247.3 588 48.5
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 3.1e-63 247.3 507 47.9
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 9.9e-62 242.3 581 48.4
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 1.7e-61 241.5 579 48.5
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 2.1e-59 234.6 516 29.7
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 1.8e-58 231.5 576 42.2
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 3.0e-58 230.7 586 47.6
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 3.3e-57 227.3 361 47.9
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 8.1e-56 222.6 531 48.6
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 7.6e-54 216.1 322 63.4
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.3e-53 215.3 520 43.1
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 2.2e-53 214.5 502 46.4
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 7.1e-52 209.5 589 47.0
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.7e-45 188.3 572 31.8
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.7e-45 188.3 572 31.8
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.1e-34 150.2 312 32.1
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 6.7e-26 123.2 148 47.3
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 5.7e-25 120.2 229 34.9
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 2.4e-23 114.8 163 39.3
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 4.5e-22 110.5 217 44.2
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 1.5e-20 105.5 578 37.5
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.8e-13 80.9 188 53.2
COL.COLO4_23949 Corchorus olitorius HOM05D000311 ORTHO05D000183 7.0e-07 60.1 130 31.5
Sp4g14990 Schrenkiella parvula HOM05D000053 ORTHO05D000035 7.0e-07 60.1 125 32.0
BcaB06g28608 Brassica carinata HOM05D000053 ORTHO05D000035 9.1e-07 59.7 128 32.8
BolC4t27693H Brassica oleracea HOM05D000053 ORTHO05D000035 4.5e-06 57.4 128 32.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 4.5e-06 57.4 51 51.0
A04p25060 Brassica napus HOM05D000053 ORTHO05D000035 5.9e-06 57.0 128 31.2


User provided reference genes

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