Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 7.6e-247 856.7 419 100.0
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 8.2e-100 368.2 278 63.3
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 8.2e-100 368.2 278 63.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.5e-98 364.0 278 62.6
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 4.5e-98 362.5 276 62.3
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 2.9e-97 359.8 275 63.6
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 3.8e-97 359.4 274 61.7
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.1e-96 357.8 285 61.8
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.5e-96 356.7 276 62.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.2e-96 356.3 272 63.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 5.5e-96 355.5 277 60.6
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 3.6e-95 352.8 271 63.5
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.7e-95 352.4 306 56.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 4.7e-95 352.4 275 61.8
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 7.9e-95 351.7 303 57.4
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.4e-94 350.9 276 60.5
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 2.3e-94 350.1 277 62.1
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.3e-94 350.1 273 61.9
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 5.1e-94 349.0 276 60.5
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 6.7e-94 348.6 278 61.2
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.1e-93 347.8 291 58.8
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.1e-93 347.8 345 52.8
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.1e-93 347.8 345 52.8
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.5e-93 347.4 274 59.9
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.5e-93 347.4 272 59.9
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.5e-93 347.4 276 60.1
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.6e-93 346.7 272 59.9
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.3e-92 344.4 271 61.6
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.8e-92 343.2 272 60.7
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 2.8e-92 343.2 277 59.9
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 1.4e-91 340.9 283 58.0
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.4e-91 340.9 279 59.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.8e-91 340.5 272 58.8
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 9.1e-91 338.2 271 59.0
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.0e-90 337.0 271 59.4
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 3.4e-90 336.3 270 58.1
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 5.9e-90 335.5 275 61.8
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.8e-89 332.8 280 57.1
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 5.0e-89 332.4 273 61.2
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 6.5e-89 332.0 276 58.7
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.9e-88 330.5 301 55.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 3.2e-88 329.7 281 58.4
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 9.4e-88 328.2 272 59.6
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.7e-87 326.6 277 57.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 6.1e-87 325.5 272 57.4
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 3.0e-86 323.2 272 59.2
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 8.8e-86 321.6 272 57.4
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-85 321.2 280 56.4
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.1e-85 321.2 280 56.4
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.1e-85 321.2 272 57.7
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.6e-85 320.1 272 58.5
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 4.4e-85 319.3 274 58.0
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.4e-85 319.3 314 51.9
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.4e-85 319.3 314 51.9
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 9.7e-85 318.2 281 56.2
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.3e-84 317.8 272 55.5
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.2e-84 317.0 277 56.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 3.7e-84 316.2 278 55.0
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 3.7e-84 316.2 273 56.4
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.8e-84 315.8 272 55.9
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.1e-83 314.7 272 54.8
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.4e-83 314.3 280 56.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.8e-83 313.9 272 56.2
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 2.4e-83 313.5 278 55.4
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 7.0e-83 312.0 273 55.3
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 1.2e-82 311.2 275 55.6
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-82 311.2 275 55.3
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.0e-82 310.5 340 47.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.5e-82 309.7 275 56.7
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 3.5e-82 309.7 274 55.5
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.5e-82 309.3 271 58.3
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.0e-81 308.1 273 56.8
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.8e-81 306.2 272 54.4
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 3.6e-79 299.7 217 66.4
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 3.6e-79 299.7 249 60.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 4.7e-79 299.3 217 66.4
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 6.1e-79 298.9 275 52.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.4e-78 297.7 286 52.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.0e-78 296.6 272 54.4
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 8.8e-78 295.0 226 62.8
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.1e-75 288.1 249 58.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 3.1e-75 286.6 283 51.6
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 4.1e-75 286.2 282 52.1
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 9.1e-75 285.0 236 58.9
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-73 281.6 278 53.6
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.9e-73 280.0 229 59.8
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 6.8e-70 268.9 281 50.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 4.4e-69 266.2 271 50.9
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 5.7e-69 265.8 222 55.9
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.2e-68 263.8 226 56.6
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.2e-68 263.8 225 57.8
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 6.3e-68 262.3 231 56.3
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.1e-67 261.5 275 49.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 7.0e-67 258.8 236 53.4
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.2e-66 258.1 230 55.7
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.3e-65 253.8 224 57.1
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 6.5e-65 252.3 211 56.9
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.5e-64 251.1 273 48.7
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 7.2e-64 248.8 238 52.5
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 7.2e-64 248.8 155 75.5
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.2e-63 248.1 282 50.0
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.2e-63 248.1 274 47.4
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 8.9e-62 241.9 151 72.8
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.0e-61 240.7 291 44.7
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 9.2e-59 231.9 150 71.3
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 4.3e-56 223.0 180 58.9
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 6.1e-55 219.2 289 41.9
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.5e-53 214.5 261 46.7
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.1e-51 208.4 157 63.7
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.0e-49 200.3 290 36.9
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.1e-46 191.8 274 40.5
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 2.4e-43 180.6 139 60.4
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 9.2e-43 178.7 245 43.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.2e-42 178.3 180 51.1
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-41 174.5 272 40.4
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.1e-38 165.2 220 42.7
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.4e-35 154.1 140 54.3
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 9.2e-35 152.1 121 63.6
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.9e-32 144.4 100 66.0
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 2.5e-32 144.1 92 72.8
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 5.2e-30 136.3 90 70.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.5e-24 117.5 159 38.4
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.9e-19 101.3 101 46.5
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.4e-14 85.1 79 53.2
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.3e-12 78.6 88 45.5
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.1e-11 75.5 61 55.7
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 5.4e-11 73.2 49 67.3
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 7.1e-11 72.8 97 47.4
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.6e-10 71.6 49 65.3
Aqoxy2G01404 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.5e-08 64.3 142 25.4
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 9.6e-08 62.4 37 70.3
PSO170G0147 Papaver somniferum HOM05D000003 ORTHO05D000004 2.8e-07 60.8 131 26.7
QL03p020243 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-07 60.5 83 32.5
PSO478G4146 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-06 58.5 88 30.7
MBI18_g10205_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.4e-06 57.8 141 27.0
QL06p003549 Quercus lobata HOM05D004938 ORTHO05D006035 4.0e-06 57.0 94 34.0


User provided reference genes

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