Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 3.7e-45 184.5 92 100.0
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 5.4e-20 100.9 83 66.3
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 9.5e-17 90.1 80 61.2
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 9.5e-17 90.1 59 67.8
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 1.2e-16 89.7 73 60.3
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 2.8e-16 88.6 70 61.4
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 2.8e-16 88.6 88 51.1
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 2.8e-16 88.6 59 71.2
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 3.6e-16 88.2 69 58.0
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 3.6e-16 88.2 64 67.2
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 8.0e-16 87.0 68 61.8
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 8.0e-16 87.0 75 58.7
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.0e-15 86.7 80 52.5
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.0e-15 86.7 68 61.8
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 1.0e-15 86.7 79 55.7
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 1.8e-15 85.9 61 63.9
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 1.8e-15 85.9 70 58.6
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 1.8e-15 85.9 82 53.7
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 1.8e-15 85.9 78 55.1
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 1.8e-15 85.9 55 72.7
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.3e-15 85.5 71 57.7
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 2.3e-15 85.5 63 65.1
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 4.0e-15 84.7 75 56.0
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 4.0e-15 84.7 57 66.7
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 4.0e-15 84.7 69 59.4
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 5.2e-15 84.3 70 58.6
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 5.2e-15 84.3 64 60.9
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 6.8e-15 84.0 66 60.6
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 6.8e-15 84.0 74 55.4
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 6.8e-15 84.0 71 56.3
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 8.8e-15 83.6 80 50.0
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 8.8e-15 83.6 74 54.1
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 8.8e-15 83.6 61 60.7
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 8.8e-15 83.6 66 62.1
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 1.2e-14 83.2 58 63.8
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 1.5e-14 82.8 71 57.7
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 2.0e-14 82.4 76 55.3
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 2.6e-14 82.0 66 54.5
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 2.6e-14 82.0 86 52.3
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 3.4e-14 81.6 53 71.7
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 4.4e-14 81.3 52 67.3
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 4.4e-14 81.3 63 61.9
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 4.4e-14 81.3 53 71.7
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 4.4e-14 81.3 53 71.7
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 4.4e-14 81.3 66 59.1
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 7.5e-14 80.5 65 60.0
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 7.5e-14 80.5 69 55.1
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 7.5e-14 80.5 60 61.7
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 7.5e-14 80.5 71 57.7
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 1.3e-13 79.7 65 58.5
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 1.7e-13 79.3 59 61.0
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.7e-13 79.3 56 64.3
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.7e-13 79.3 56 64.3
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 1.7e-13 79.3 65 58.5
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 1.7e-13 79.3 74 51.4
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.7e-13 79.3 69 53.6
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 1.7e-13 79.3 69 53.6
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.7e-13 79.3 71 52.1
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 1.7e-13 79.3 56 62.5
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 2.2e-13 79.0 56 62.5
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 2.2e-13 79.0 56 62.5
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.2e-13 79.0 53 69.8
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 2.8e-13 78.6 74 50.0
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 2.8e-13 78.6 52 67.3
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 3.7e-13 78.2 56 60.7
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 3.7e-13 78.2 67 56.7
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 3.7e-13 78.2 67 56.7
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 3.7e-13 78.2 65 58.5
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 4.9e-13 77.8 59 55.9
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 4.9e-13 77.8 59 61.0
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 8.3e-13 77.0 73 50.7
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 1.1e-12 76.6 65 56.9
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 1.4e-12 76.3 66 54.5
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 1.8e-12 75.9 62 56.5
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 3.1e-12 75.1 71 45.1
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 3.1e-12 75.1 66 54.5
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 3.8e-10 68.2 53 67.9
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 1.1e-09 66.6 65 50.8
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 2.1e-08 62.4 57 52.6
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 2.8e-08 62.0 36 80.6
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 4.7e-08 61.2 35 71.4
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 4.7e-08 61.2 51 58.8
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 4.7e-08 61.2 50 64.0
PSO170G0729 Papaver somniferum HOM05D066428 ORTHO05D009711 1.0e-07 60.1 68 50.0
PSO700G0322 Papaver somniferum HOM05D066428 ORTHO05D009711 1.4e-07 59.7 73 45.2
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 1.8e-07 59.3 43 55.8
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 2.3e-07 58.9 48 54.2
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 3.0e-07 58.5 43 65.1
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 2.0e-06 55.8 48 58.3
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 2.0e-06 55.8 48 54.2


User provided reference genes

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