Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0177G045 Amborella trichopoda HOM05D006503 ORTHO05D008116 1.1e-51 207.2 186 100.0
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 8.6e-17 91.3 52 84.6
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 2.4e-11 73.2 52 65.4
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 7.0e-11 71.6 52 61.5
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 9.2e-11 71.2 52 63.5
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 3.5e-10 69.3 52 59.6
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 7.8e-10 68.2 52 55.8
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 1.0e-09 67.8 52 51.9
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 2.3e-09 66.6 52 57.7
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 3.0e-09 66.2 52 59.6
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 3.9e-09 65.9 53 58.5
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.9e-09 65.9 53 60.4
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 3.9e-09 65.9 53 60.4
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 3.9e-09 65.9 52 55.8
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 3.9e-09 65.9 53 60.4
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 5.0e-09 65.5 52 55.8
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 5.0e-09 65.5 52 55.8
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 6.6e-09 65.1 51 56.9
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 8.6e-09 64.7 53 60.4
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 1.5e-08 63.9 52 51.9
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 1.5e-08 63.9 52 53.8
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 1.9e-08 63.5 52 53.8
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 2.5e-08 63.2 52 51.9
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 2.5e-08 63.2 52 51.9
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 3.3e-08 62.8 52 55.8
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 3.3e-08 62.8 52 55.8
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 3.3e-08 62.8 52 48.1
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 4.3e-08 62.4 52 55.8
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 4.3e-08 62.4 52 51.9
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.3e-08 62.4 52 51.9
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 4.3e-08 62.4 52 53.8
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 4.3e-08 62.4 52 51.9
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 5.6e-08 62.0 52 50.0
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 5.6e-08 62.0 52 50.0
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 5.6e-08 62.0 52 50.0
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 7.3e-08 61.6 53 56.6
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 7.3e-08 61.6 53 54.7
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 7.3e-08 61.6 53 56.6
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 7.3e-08 61.6 52 48.1
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 9.5e-08 61.2 53 54.7
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 9.5e-08 61.2 53 54.7
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 9.5e-08 61.2 52 53.8
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 1.2e-07 60.8 52 51.9
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 2.1e-07 60.1 52 51.9
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 2.1e-07 60.1 52 50.0
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 2.1e-07 60.1 52 50.0
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 2.1e-07 60.1 52 53.8
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.8e-07 59.7 53 52.8
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.8e-07 59.7 53 52.8
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 2.8e-07 59.7 51 51.0
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 3.6e-07 59.3 49 51.0
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 3.6e-07 59.3 52 48.1
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 3.6e-07 59.3 52 48.1
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 4.7e-07 58.9 47 55.3
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 4.7e-07 58.9 51 45.1
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 6.2e-07 58.5 52 50.0
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 6.2e-07 58.5 52 48.1
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 8.0e-07 58.2 52 48.1
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 8.0e-07 58.2 52 48.1
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 42.3
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 49 44.9
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 42.3
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 42.3
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 42.3
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 42.3
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 50.0
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 1.4e-06 57.4 52 48.1
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.8e-06 57.0 52 48.1
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 3.1e-06 56.2 52 46.2
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 3.1e-06 56.2 51 43.1
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 3.1e-06 56.2 52 46.2
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 3.1e-06 56.2 52 48.1
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 3.1e-06 56.2 52 48.1
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 3.1e-06 56.2 52 48.1
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 5.2e-06 55.5 52 42.3
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 5.2e-06 55.5 52 42.3
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 5.2e-06 55.5 52 44.2
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 5.2e-06 55.5 52 44.2
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 8.9e-06 54.7 52 48.1


User provided reference genes

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