Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 0.0e+00 1181.8 625 100.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 3.6e-168 595.9 640 56.4
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 3.1e-151 539.7 638 53.4
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.3e-138 496.9 636 50.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 3.9e-138 496.1 649 50.4
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 7.3e-137 491.9 515 55.1
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.8e-136 490.0 662 49.7
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.0e-135 486.1 633 48.0
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.2e-134 484.6 636 49.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.0e-134 483.8 644 48.4
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.4e-134 483.0 666 48.5
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 6.4e-133 478.8 650 47.2
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 8.4e-133 478.4 636 50.2
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 3.2e-132 476.5 655 47.8
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 4.2e-132 476.1 651 47.6
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.1e-131 473.8 646 48.0
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.1e-131 473.8 648 48.3
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.5e-131 473.0 638 48.9
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.7e-130 468.4 652 47.1
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.8e-127 460.7 639 46.2
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 5.3e-127 459.1 638 48.4
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 5.3e-127 459.1 637 49.8
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 9.0e-127 458.4 654 46.9
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.0e-126 457.2 487 56.5
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.5e-126 456.1 675 45.6
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 6.4e-125 452.2 708 43.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.4e-125 451.8 652 47.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 9.3e-124 448.4 651 48.7
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.6e-123 447.6 639 48.2
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.7e-122 441.8 667 46.2
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 3.3e-121 439.9 643 47.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 5.6e-121 439.1 599 50.1
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 7.4e-121 438.7 570 49.5
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.4e-119 434.5 518 51.2
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.8e-119 434.1 672 46.6
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.0e-119 433.0 623 44.8
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.2e-117 427.2 507 51.9
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 2.9e-117 426.8 676 45.0
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.8e-117 426.4 672 46.3
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 4.9e-117 426.0 639 45.4
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 6.4e-117 425.6 694 42.9
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 8.4e-117 425.2 639 45.4
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 5.5e-116 422.5 655 44.9
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.2e-115 421.4 634 44.5
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.6e-115 421.0 698 42.8
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 1.6e-115 421.0 637 44.9
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.7e-115 420.2 632 44.8
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 7.9e-115 418.7 633 44.5
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 6.7e-114 415.6 564 47.5
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.1e-113 414.8 697 43.9
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.7e-112 409.8 711 44.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 8.2e-112 408.7 520 49.0
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 2.0e-110 404.1 644 42.9
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 4.5e-110 402.9 542 48.5
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 4.5e-110 402.9 627 46.7
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.0e-109 401.7 504 48.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 2.9e-109 400.2 648 43.4
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 2.9e-109 400.2 510 47.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.8e-109 399.8 554 47.8
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 6.5e-109 399.1 618 43.4
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 8.4e-109 398.7 715 42.0
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.4e-108 397.9 501 48.9
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.5e-108 397.1 625 44.8
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 3.2e-108 396.7 647 46.1
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 4.2e-108 396.4 392 57.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 5.5e-108 396.0 639 44.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 9.3e-108 395.2 660 41.2
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.6e-107 394.4 487 50.7
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 6.0e-107 392.5 547 47.9
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 7.9e-107 392.1 649 45.8
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.3e-106 390.6 502 49.2
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.0e-106 390.2 772 39.5
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 3.0e-106 390.2 771 39.3
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 3.0e-106 390.2 622 42.9
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.9e-105 387.5 562 48.4
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.4e-103 381.3 523 48.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.4e-103 381.3 697 40.3
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.4e-103 380.6 512 48.2
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.5e-102 377.9 538 48.5
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.4e-102 376.7 618 44.7
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.0e-101 375.2 625 42.6
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 3.8e-101 373.2 620 44.8
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.4e-100 371.3 554 45.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 2.5e-100 370.5 633 42.7
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 5.5e-100 369.4 636 40.1
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.2e-99 368.2 616 45.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.1e-99 367.5 620 42.1
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.1e-99 367.5 620 42.1
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 4.6e-99 366.3 516 46.5
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.8e-98 364.4 511 47.6
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 3.0e-98 363.6 571 42.9
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 4.1e-95 353.2 491 48.7
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.9e-94 349.4 397 52.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 1.4e-87 328.2 617 39.5
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.8e-87 327.8 427 48.0
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 3.2e-84 317.0 277 59.9
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 9.4e-84 315.5 639 39.3
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.2e-80 304.3 314 56.4
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.7e-77 294.7 262 62.2
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.5e-68 265.0 431 43.6
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.5e-68 264.2 325 47.4
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.4e-65 253.8 409 45.0
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.7e-64 251.5 408 44.9
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 5.4e-63 246.5 354 41.2
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 9.1e-63 245.7 249 55.0
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.7e-62 244.2 260 52.7
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.4e-55 221.9 386 44.0
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.1e-55 220.3 260 51.2
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 3.3e-52 210.7 373 44.2
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.2e-41 175.6 188 52.1
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.6e-41 174.5 167 56.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.4e-39 167.9 253 43.9
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.1e-39 166.4 129 63.6
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 5.8e-33 146.7 246 44.3
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 7.5e-33 146.4 237 42.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.6e-30 138.7 144 52.8
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 8.6e-29 132.9 100 69.0
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.9e-28 131.7 100 69.0
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.1e-27 126.3 201 42.8
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 9.3e-23 112.8 366 28.7
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 3.6e-19 100.9 195 41.0
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.4e-15 89.0 170 42.4
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 4.2e-15 87.4 70 64.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 1.9e-12 78.6 238 31.1
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 6.9e-10 70.1 73 50.7


User provided reference genes

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