Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.2e-223 778.1 385 100.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 4.3e-188 661.4 383 86.7
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.1e-127 460.7 385 61.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.4e-125 453.8 386 60.1
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 4.0e-125 452.2 386 59.8
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.2e-124 450.7 384 58.9
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.1e-122 444.1 386 58.8
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 2.4e-122 443.0 383 58.0
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.4e-122 441.8 370 59.5
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.0e-121 439.9 385 57.4
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.0e-120 437.6 385 58.2
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.3e-120 436.4 385 58.4
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.9e-120 436.0 384 58.1
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.0e-120 435.3 385 56.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 2.5e-119 433.0 370 60.3
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 5.5e-119 431.8 384 57.8
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 9.5e-119 431.0 382 56.0
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 9.5e-119 431.0 386 56.5
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.2e-118 430.6 385 57.9
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.1e-118 429.9 382 56.3
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.8e-118 429.5 385 57.9
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 2.8e-118 429.5 386 57.8
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.1e-118 428.3 385 57.9
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 8.0e-118 427.9 406 55.2
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 8.0e-118 427.9 382 56.0
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.0e-117 427.6 382 56.0
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.0e-117 427.6 382 56.0
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.4e-117 427.2 386 56.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.8e-117 426.8 385 55.8
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.8e-117 426.8 386 57.0
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.3e-117 426.4 385 57.4
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.3e-117 426.4 385 55.1
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 4.0e-117 425.6 385 57.7
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 4.0e-117 425.6 386 56.0
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 4.0e-117 425.6 382 56.5
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.8e-117 424.9 382 55.8
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 6.8e-117 424.9 385 57.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 8.8e-117 424.5 382 55.5
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.2e-116 424.1 385 56.4
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.5e-116 423.7 386 56.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 2.0e-116 423.3 385 56.4
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.3e-115 420.6 385 55.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.3e-115 420.6 385 55.8
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.3e-115 420.6 439 51.7
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 2.8e-115 419.5 387 55.8
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.8e-115 419.5 386 56.7
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 4.9e-115 418.7 385 56.1
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 8.3e-115 417.9 385 56.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.1e-114 417.5 380 55.3
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.4e-114 417.2 385 54.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 3.1e-114 416.0 385 54.3
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.1e-114 416.0 385 55.3
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 7.0e-114 414.8 386 56.2
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.2e-114 414.5 385 53.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 9.2e-114 414.5 383 55.6
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 9.2e-114 414.5 391 55.8
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.6e-113 413.7 383 53.8
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 2.0e-113 413.3 380 55.3
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 2.0e-113 413.3 384 53.9
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.7e-113 412.9 387 55.8
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 4.5e-113 412.1 380 54.5
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.5e-113 412.1 382 54.2
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 7.8e-113 411.4 386 54.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.0e-112 411.0 375 54.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.0e-112 411.0 383 55.6
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 2.9e-112 409.5 383 55.9
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 3.8e-112 409.1 386 53.4
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 3.3e-111 406.0 386 54.7
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 4.7e-110 402.1 386 53.1
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 8.9e-109 397.9 386 54.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.5e-108 397.1 370 55.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.7e-107 393.7 386 54.7
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.4e-106 390.6 383 53.0
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 3.2e-106 389.4 387 52.5
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.0e-105 386.7 385 53.0
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 7.8e-105 384.8 388 51.0
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.0e-104 384.4 386 52.8
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 3.0e-104 382.9 386 51.6
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 3.0e-104 382.9 405 50.4
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 3.9e-104 382.5 389 50.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.9e-103 380.2 387 50.6
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-103 380.2 387 50.6
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 3.3e-103 379.4 386 51.8
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 4.3e-103 379.0 387 50.4
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 9.5e-103 377.9 379 52.0
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.8e-102 376.3 387 50.1
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 4.7e-102 375.6 387 50.1
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 4.7e-102 375.6 387 50.1
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 4.7e-102 375.6 386 50.5
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 9.8e-100 367.9 433 47.3
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.0e-97 360.1 382 51.0
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 3.0e-96 356.3 325 56.0
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 5.6e-95 352.1 381 48.0
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.6e-94 350.5 384 48.4
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 3.3e-87 326.2 388 45.9
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.9e-82 310.5 266 56.8
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.6e-76 290.0 277 53.4
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.7e-72 277.3 375 40.5
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 3.6e-70 269.6 276 51.1
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.5e-68 264.2 415 40.0
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.0e-64 251.5 184 64.1
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.5e-63 247.7 261 51.3
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 4.5e-44 183.0 166 57.2
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 5.3e-37 159.5 220 43.2
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 5.3e-37 159.5 220 43.2
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.2e-36 158.3 125 60.8
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.3e-35 154.8 142 59.2
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.4e-34 151.4 112 61.6
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-33 148.3 139 54.0
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.1e-31 141.7 164 46.3
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.0e-31 141.0 121 55.4
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 3.2e-26 123.6 133 51.9
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.8e-21 107.8 359 27.9
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 9.1e-21 105.5 134 46.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.0e-19 102.1 97 54.6
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.7e-17 94.0 107 50.5
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.2e-14 84.3 114 43.0
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.0e-11 75.5 51 70.6
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 5.0e-11 73.2 54 66.7
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 6.5e-11 72.8 82 51.2
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 3.2e-10 70.5 53 60.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 5.7e-07 59.7 45 64.4
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.7e-06 57.0 63 49.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 8.3e-06 55.8 92 42.4
SMO364G0575 Selaginella moellendorffii HOM05D000883 ORTHO05D002942 8.3e-06 55.8 178 29.2


User provided reference genes

Program Settings