Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0171G046 Amborella trichopoda HOM05D001616 ORTHO05D038312 2.1e-85 318.9 155 100.0
MBI11_g41396_MAGBIO Magnolia biondii HOM05D001616 ORTHO05D004707 8.2e-21 104.4 122 54.1
CANSAT11G0668 Cannabis sativa HOM05D001616 ORTHO05D004707 2.9e-18 95.9 74 66.2
Nn4g22291 Nelumbo nucifera HOM05D001616 ORTHO05D004707 3.8e-18 95.5 107 51.4
Ah.04g166270 Amaranthus hybridus HOM05D001616 ORTHO05D004707 6.5e-18 94.7 71 69.0
Aqoxy5G03327 Aquilegia oxysepala HOM05D001616 ORTHO05D004707 1.4e-17 93.6 109 52.3
Sp6g17200 Schrenkiella parvula HOM05D001616 ORTHO05D004707 1.4e-17 93.6 77 63.6
MSTRG.14463 Avicennia marina HOM05D001616 ORTHO05D004707 1.9e-17 93.2 86 58.1
MBI16_g41929_MAGBIO Magnolia biondii HOM05D001616 ORTHO05D004707 1.9e-17 93.2 101 55.4
Prupe.4G225000 Prunus persica HOM05D001616 ORTHO05D004707 1.9e-17 93.2 69 69.6
Dinv40805 Davidia involucrata HOM05D001616 ORTHO05D004707 2.5e-17 92.8 89 59.6
Glyma.18G089400 Glycine max HOM05D001616 ORTHO05D004707 2.5e-17 92.8 69 68.1
CiPaw.11G195600 Carya illinoinensis HOM05D001616 ORTHO05D004707 3.2e-17 92.4 87 59.8
Duzib213G0357 Durio zibethinus HOM05D001616 ORTHO05D004707 3.2e-17 92.4 75 64.0
Thhalv10013612m.g Eutrema salsugineum HOM05D001616 ORTHO05D004707 3.2e-17 92.4 77 63.6
Gohir.A13G136000 Gossypium hirsutum HOM05D001616 ORTHO05D004707 3.2e-17 92.4 75 64.0
Gohir.D13G140300 Gossypium hirsutum HOM05D001616 ORTHO05D004707 3.2e-17 92.4 75 64.0
vmacro09684 Vaccinium macrocarpon HOM05D001616 ORTHO05D004707 3.2e-17 92.4 78 62.8
Aa31LG4G210 Aethionema arabicum HOM05D001616 ORTHO05D004707 4.2e-17 92.0 73 65.8
CDE09G1321 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 4.2e-17 92.0 111 48.6
Potri.001G359500 Populus trichocarpa HOM05D001616 ORTHO05D004707 4.2e-17 92.0 69 68.1
Sabra16G0237200 Salix brachista HOM05D001616 ORTHO05D004707 4.2e-17 92.0 69 68.1
TWI38G0016 Tripterygium wilfordii HOM05D001616 ORTHO05D004707 4.2e-17 92.0 48 91.7
AL8G30832 Arabidopsis lyrata HOM05D001616 ORTHO05D004707 5.5e-17 91.7 77 63.6
AT5G55280 Arabidopsis thaliana HOM05D001616 ORTHO05D004707 5.5e-17 91.7 77 63.6
CARHR268640 Cardamine hirsuta HOM05D001616 ORTHO05D004707 5.5e-17 91.7 77 63.6
Hma1.2p1_3177F.1_g333630 Hydrangea macrophylla HOM05D001616 ORTHO05D004707 5.5e-17 91.7 84 59.5
TAR629G2377 Trochodendron aralioides HOM05D000372 ORTHO05D000948 5.5e-17 91.7 100 57.0
arahy.Tifrunner.gnm1.ann1.JAGV0H Arachis hypogaea HOM05D001616 ORTHO05D004707 7.1e-17 91.3 81 60.5
arahy.Tifrunner.gnm1.ann1.YP9IVY Arachis hypogaea HOM05D001616 ORTHO05D004707 7.1e-17 91.3 81 60.5
BcaB08g35888 Brassica carinata HOM05D001616 ORTHO05D004707 7.1e-17 91.3 77 62.3
BcaC03g14249 Brassica carinata HOM05D001616 ORTHO05D004707 7.1e-17 91.3 77 63.6
C02p16300 Brassica napus HOM05D001616 ORTHO05D004707 7.1e-17 91.3 77 63.6
BolC2t07731H Brassica oleracea HOM05D001616 ORTHO05D004707 7.1e-17 91.3 77 63.6
CDE08G0977 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 7.1e-17 91.3 87 59.8
COL.COLO4_09745 Corchorus olitorius HOM05D001616 ORTHO05D004707 7.1e-17 91.3 78 61.5
MD03G1192200 Malus domestica HOM05D001616 ORTHO05D004707 7.1e-17 91.3 69 66.7
Sc03g0008260 Simmondsia chinensis HOM05D001616 ORTHO05D004707 7.1e-17 91.3 69 66.7
Atru.chr2.3541 Acer truncatum HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Atru.chr2.3561 Acer truncatum HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
ATR1101G003 Amborella trichopoda HOM05D001616 ORTHO05D004707 9.3e-17 90.9 98 53.1
AUR62015903 Chenopodium quinoa HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
AUR62020320 Chenopodium quinoa HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Ciclev10008445m.g Citrus clementina HOM05D001616 ORTHO05D004707 9.3e-17 90.9 69 68.1
Eucgr.F03510 Eucalyptus grandis HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Gorai.002G094200 Gossypium raimondii HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
MD11G1208400 Malus domestica HOM05D001616 ORTHO05D004707 9.3e-17 90.9 69 68.1
Nn1g03321 Nelumbo nucifera HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Phvul.006G049100 Phaseolus vulgaris HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Rhsim04G0016100 Rhododendron simsii HOM05D001616 ORTHO05D004707 9.3e-17 90.9 75 62.7
THA.LOC104811637 Tarenaya hassleriana HOM05D001616 ORTHO05D004707 9.3e-17 90.9 73 65.8
Thecc.07G026200 Theobroma cacao HOM05D001616 ORTHO05D004707 9.3e-17 90.9 75 62.7
VMungo0540G0108 Vigna mungo HOM05D001616 ORTHO05D004707 9.3e-17 90.9 48 89.6
Ah.06g182100 Amaranthus hybridus HOM05D001616 ORTHO05D004707 1.2e-16 90.5 71 67.6
Gohir.D01G071400 Gossypium hirsutum HOM05D001616 ORTHO05D004707 1.2e-16 90.5 83 59.0
Gorai.013G156900 Gossypium raimondii HOM05D001616 ORTHO05D004707 1.2e-16 90.5 75 62.7
Hma1.2p1_0036F.1_g023020 Hydrangea macrophylla HOM05D001616 ORTHO05D004707 1.2e-16 90.5 72 66.7
BcaB05g22196 Brassica carinata HOM05D001616 ORTHO05D004707 1.6e-16 90.1 71 66.2
CAN.G337.47 Capsicum annuum HOM05D001616 ORTHO05D004707 1.6e-16 90.1 90 54.4
Cc05_g14410 Coffea canephora HOM05D001616 ORTHO05D004707 1.6e-16 90.1 50 84.0
PGSC0003DMG400022200 Solanum tuberosum HOM05D001616 ORTHO05D004707 1.6e-16 90.1 90 55.6
SGA_v2.0_scaffold8G04385 Striga asiatica HOM05D001616 ORTHO05D004707 1.6e-16 90.1 62 74.2
Zm00001eb067210 Zea mays HOM05D001616 ORTHO05D004707 1.6e-16 90.1 63 68.3
BraA02t06041Z Brassica rapa HOM05D001616 ORTHO05D004707 2.1e-16 89.7 77 62.3
FvH4_3g23650 Fragaria vesca HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
FAN11G3310 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
FAN16G1556 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
FAN21G0984 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
FAN25G1481 Fragaria x ananassa HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
Lj6g0015346 Lotus japonicus HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 87.5
PGR031G1881 Punica granatum HOM05D001616 ORTHO05D004707 2.1e-16 89.7 64 70.3
RcHm_v2.0_Chr5g0041711 Rosa chinensis HOM05D001616 ORTHO05D004707 2.1e-16 89.7 48 89.6
TAR624G0334 Trochodendron aralioides HOM05D001616 ORTHO05D004707 2.1e-16 89.7 84 58.3
TAR626G1703 Trochodendron aralioides HOM05D001616 ORTHO05D004707 2.1e-16 89.7 64 71.9
CSS0024025 Camellia sinensis var. sinensis HOM05D001616 ORTHO05D004707 2.7e-16 89.4 50 84.0
CDE05G0564 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 2.7e-16 89.4 112 50.9
Os04g0665400 Oryza sativa ssp. japonica HOM05D001616 ORTHO05D004707 2.7e-16 89.4 60 71.7
EL10Ac4g07674 Beta vulgaris HOM05D001616 ORTHO05D004707 3.5e-16 89.0 75 62.7
MELO3C014156.2 Cucumis melo HOM05D001616 ORTHO05D004707 3.5e-16 89.0 71 66.2
Gohir.A01G085100 Gossypium hirsutum HOM05D001616 ORTHO05D004707 3.5e-16 89.0 122 45.1
Lalb_Chr00c48g0412901 Lupinus albus HOM05D001616 ORTHO05D004707 3.5e-16 89.0 117 51.3
Lalb_Chr00c48g0413031 Lupinus albus HOM05D001616 ORTHO05D004707 3.5e-16 89.0 117 51.3
Lalb_Chr04g0248101 Lupinus albus HOM05D001616 ORTHO05D004707 3.5e-16 89.0 117 51.3
Sed0015616 Sechium edule HOM05D001616 ORTHO05D004707 3.5e-16 89.0 71 66.2
Solyc07g065050.4 Solanum lycopersicum HOM05D001616 ORTHO05D004707 3.5e-16 89.0 90 54.4
Sopen07g033260 Solanum pennellii HOM05D001616 ORTHO05D004707 3.5e-16 89.0 90 54.4
SGA_v2.0_scaffold478G52221 Striga asiatica HOM05D001616 ORTHO05D004707 3.5e-16 89.0 72 63.9
Aqoxy1G04093 Aquilegia oxysepala HOM05D001616 ORTHO05D004707 4.6e-16 88.6 87 57.5
Carub.0008s1561 Capsella rubella HOM05D001616 ORTHO05D004707 4.6e-16 88.6 87 57.5
Cpa.g.sc12.232 Carica papaya HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
Cfa020268 Carpinus fangiana HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
Ca_14771_v3 Cicer arietinum L. HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
ClCG10G004930 Citrullus lanatus HOM05D001616 ORTHO05D004707 4.6e-16 88.6 71 66.2
Haze_09754 Corylus avellana HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
Glyma.08G322800 Glycine max HOM05D001616 ORTHO05D004707 4.6e-16 88.6 81 59.3
Nitab4.5_0001160g0080 Nicotiana tabacum HOM05D001616 ORTHO05D004707 4.6e-16 88.6 50 82.0
Nitab4.5_0005874g0040 Nicotiana tabacum HOM05D001616 ORTHO05D004707 4.6e-16 88.6 50 82.0
Peaxi162Scf00235g00839 Petunia axillaris HOM05D001616 ORTHO05D004707 4.6e-16 88.6 71 63.4
Psat5g175920 Pisum sativum HOM05D001616 ORTHO05D004707 4.6e-16 88.6 66 68.2
Hund01947 Selenicereus undatus HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
TPR.G32223 Trifolium pratense HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
GSVIVG01037738001 Vitis vinifera HOM05D001616 ORTHO05D004707 4.6e-16 88.6 48 87.5
BcaC04g20252 Brassica carinata HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
A02p09770 Brassica napus HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
A10p12540 Brassica napus HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
C09p45700 Brassica napus HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
BolC9t57456H Brassica oleracea HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
BraA10t43347Z Brassica rapa HOM05D001616 ORTHO05D004707 6.1e-16 88.2 48 87.5
CiPaw.12G134300 Carya illinoinensis HOM05D001616 ORTHO05D004707 6.1e-16 88.2 71 64.8
ECA236G1385 Erigeron canadensis HOM05D001954 ORTHO05D004707 6.1e-16 88.2 72 59.7
PSO478G4081 Papaver somniferum HOM05D001616 ORTHO05D004707 6.1e-16 88.2 100 54.0
Hund23192 Selenicereus undatus HOM05D001616 ORTHO05D004707 6.1e-16 88.2 110 47.3
SEGI_23500 Sequoiadendron giganteum HOM05D001616 ORTHO05D004707 6.1e-16 88.2 107 49.5
unitig_27.g25147 Utricularia gibba HOM05D001616 ORTHO05D004707 6.1e-16 88.2 59 71.2
HPP92_020517 Vanilla planifolia HOM05D001616 ORTHO05D004707 6.1e-16 88.2 87 58.6
CsaV3_3G004580 Cucumis sativus L. HOM05D001616 ORTHO05D004707 7.9e-16 87.8 67 68.7
DCAR_022595 Daucus carota HOM05D001616 ORTHO05D004707 7.9e-16 87.8 75 60.0
HanXRQChr11g0334271 Helianthus annuus HOM05D001616 ORTHO05D004707 7.9e-16 87.8 73 58.9
Actinidia10755 Actinidia chinensis HOM05D001616 ORTHO05D004707 1.0e-15 87.4 51 78.4
arahy.Tifrunner.gnm1.ann1.4MH8P5 Arachis hypogaea HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
arahy.Tifrunner.gnm1.ann1.C665MH Arachis hypogaea HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
Ca_06353_v3 Cicer arietinum L. HOM05D001616 ORTHO05D004707 1.0e-15 87.4 92 57.6
Glyma.02G295800 Glycine max HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
Glyma.14G017600 Glycine max HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
LjContig00272g0015073 Lotus japonicus HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
Lalb_Chr10g0107201 Lupinus albus HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
Medtr5g094120 Medicago truncatula HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
PSO017G5877 Papaver somniferum HOM05D001616 ORTHO05D004707 1.0e-15 87.4 100 54.0
Psat2g010320 Pisum sativum HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
TPR.G18336 Trifolium pratense HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
TPR.G30647 Trifolium pratense HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
TWI39G0596 Tripterygium wilfordii HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 85.4
VMungo0647G1145 Vigna mungo HOM05D001616 ORTHO05D004707 1.0e-15 87.4 48 87.5
Actinidia35373 Actinidia chinensis HOM05D001616 ORTHO05D004707 1.8e-15 86.7 84 56.0
Lsat_1_v5_gn_7_113600 Lactuca sativa HOM05D001616 ORTHO05D004707 2.3e-15 86.3 50 78.0
unitig_699.g19466 Utricularia gibba HOM05D001616 ORTHO05D004707 2.3e-15 86.3 57 70.2
Medtr3g055590 Medicago truncatula HOM05D001616 ORTHO05D004707 3.0e-15 85.9 66 65.2
Nitab4.5_0003869g0070 Nicotiana tabacum HOM05D001616 ORTHO05D004707 3.0e-15 85.9 50 78.0
Oeu005983.1 Olea europaea HOM05D001616 ORTHO05D004707 3.9e-15 85.5 50 78.0
CDE05G2017 Ceratophyllum demersum HOM05D001616 ORTHO05D004707 6.7e-15 84.7 112 49.1
Duzib268G1580 Durio zibethinus HOM05D001616 ORTHO05D004707 6.7e-15 84.7 48 87.5
SMO271G0107 Selaginella moellendorffii HOM05D001616 ORTHO05D004707 6.7e-15 84.7 98 52.0
Dinv22222 Davidia involucrata HOM05D001616 ORTHO05D004707 8.7e-15 84.3 75 58.7
Pp3c19_2490 Physcomitrium patens HOM05D001616 ORTHO05D004707 8.7e-15 84.3 105 47.6
PGSC0003DMG400012846 Solanum tuberosum HOM05D001616 ORTHO05D004707 1.5e-14 83.6 50 76.0
Migut.M01700 Erythranthe guttata HOM05D001616 ORTHO05D004707 1.9e-14 83.2 48 77.1
Peaxi162Scf01165g00022 Petunia axillaris HOM05D001616 ORTHO05D004707 1.9e-14 83.2 50 78.0
Mapoly0029s0085 Marchantia polymorpha HOM05D001616 ORTHO05D004707 2.5e-14 82.8 114 49.1
Nitab4.5_0002051g0070 Nicotiana tabacum HOM05D001616 ORTHO05D004707 2.5e-14 82.8 50 76.0
Lj1A881T83 Lonicera japonica HOM05D001616 ORTHO05D004707 3.3e-14 82.4 70 60.0
Pp3c22_4940 Physcomitrium patens HOM05D001616 ORTHO05D004707 4.3e-14 82.0 113 45.1
VMungo1215G3201 Vigna mungo HOM05D001616 ORTHO05D004707 5.7e-14 81.6 119 42.0
PSO210G3145 Papaver somniferum HOM05D001616 ORTHO05D004707 7.4e-14 81.3 49 83.7
Lj8C174T5 Lonicera japonica HOM05D001616 ORTHO05D004707 9.7e-14 80.9 50 76.0
PSO302G0169 Papaver somniferum HOM05D001616 ORTHO05D004707 9.7e-14 80.9 70 62.9
CBR_g22446 Chara braunii HOM05D001616 ORTHO05D004707 8.2e-13 77.8 93 49.5
Solyc12g014560.3 Solanum lycopersicum HOM05D001616 ORTHO05D004707 8.2e-13 77.8 50 72.0
Sopen12g007440 Solanum pennellii HOM05D001616 ORTHO05D004707 1.1e-12 77.4 50 70.0
TPR.G18333 Trifolium pratense HOM05D000062 ORTHO05D000043 2.6e-11 72.8 49 69.4
Cre02.g118600 Chlamydomonas reinhardtii HOM05D001616 ORTHO05D004707 4.5e-11 72.0 107 41.1
MD17G1254500 Malus domestica HOM05D001616 ORTHO05D004707 1.9e-09 66.6 89 44.9
TPR.G30641 Trifolium pratense HOM05D000062 ORTHO05D000043 1.9e-09 66.6 72 50.0
Migut.H01786 Erythranthe guttata HOM05D001616 ORTHO05D004707 5.5e-09 65.1 42 71.4
MCO07G335 Micromonas commoda HOM05D001616 ORTHO05D004707 1.2e-08 63.9 37 75.7
TPR.G28183 Trifolium pratense HOM05D001616 ORTHO05D038312 6.1e-08 61.6 44 68.2
SMO351G0447 Selaginella moellendorffii HOM05D001616 ORTHO05D003701 1.1e-06 57.4 86 38.4
PSO339G5325 Papaver somniferum HOM05D001616 ORTHO05D003701 2.5e-06 56.2 75 40.0
PSO384G2140 Papaver somniferum HOM05D001616 ORTHO05D003701 2.5e-06 56.2 75 40.0
Pp3c7_11570 Physcomitrium patens HOM05D001616 ORTHO05D003701 5.7e-06 55.1 88 35.2
PRCOL_00000929 Prasinoderma coloniale HOM05D001616 ORTHO05D004707 9.7e-06 54.3 36 72.2
Solyc09g009430.3 Solanum lycopersicum HOM05D001616 ORTHO05D003701 9.7e-06 54.3 75 38.7
Sopen09g004170 Solanum pennellii HOM05D001616 ORTHO05D003701 9.7e-06 54.3 75 38.7
PGSC0003DMG402002661 Solanum tuberosum HOM05D001616 ORTHO05D030551 9.7e-06 54.3 75 38.7


User provided reference genes

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