Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 3.2e-150 535.0 264 100.0
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.7e-103 379.8 261 67.8
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.8e-98 362.5 264 65.5
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.0e-95 354.0 253 64.0
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.1e-94 350.5 261 64.0
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.5e-94 350.1 252 64.7
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.9e-94 349.7 249 65.1
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 4.2e-94 348.6 246 65.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 5.5e-94 348.2 260 63.5
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.6e-93 345.5 244 66.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 4.7e-93 345.1 261 61.3
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.4e-92 343.6 264 62.5
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 1.8e-92 343.2 269 59.9
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.0e-92 342.4 261 60.5
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 3.0e-92 342.4 255 62.0
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 5.2e-92 341.7 249 64.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 5.2e-92 341.7 246 65.0
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 5.2e-92 341.7 248 62.9
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 5.2e-92 341.7 261 62.5
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 8.8e-92 340.9 250 64.4
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.2e-91 340.5 262 62.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.2e-91 340.5 246 64.6
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.2e-91 340.5 243 63.0
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 2.0e-91 339.7 257 63.0
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 2.6e-91 339.3 252 63.5
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 7.5e-91 337.8 258 61.6
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 7.5e-91 337.8 258 61.6
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 7.5e-91 337.8 254 63.8
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.3e-90 337.0 262 60.3
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 2.2e-90 336.3 245 65.7
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.8e-90 335.9 247 61.5
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.7e-90 335.5 250 60.8
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 4.8e-90 335.1 250 62.8
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 6.3e-90 334.7 243 66.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 6.3e-90 334.7 247 61.1
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 8.3e-90 334.3 246 64.2
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 8.3e-90 334.3 268 60.8
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.4e-89 333.6 243 65.8
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.4e-89 333.6 243 63.0
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 1.8e-89 333.2 262 61.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.8e-89 333.2 244 63.5
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.4e-89 332.8 246 63.4
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 3.1e-89 332.4 247 61.1
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 5.4e-89 331.6 244 65.2
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 5.4e-89 331.6 242 65.7
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 5.4e-89 331.6 247 63.6
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.4e-89 331.6 241 63.5
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 5.4e-89 331.6 247 62.8
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 7.0e-89 331.3 261 57.9
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 9.1e-89 330.9 244 63.1
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 9.1e-89 330.9 243 63.0
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 9.1e-89 330.9 259 59.1
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.0e-88 329.7 258 59.3
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 2.0e-88 329.7 243 64.6
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 4.5e-88 328.6 243 63.4
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.9e-88 328.2 238 66.0
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 7.7e-88 327.8 242 63.2
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.0e-87 327.4 243 64.6
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.0e-87 327.4 262 58.4
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.3e-87 327.0 243 63.0
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.7e-87 326.6 268 57.8
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 2.9e-87 325.9 256 61.3
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 3.8e-87 325.5 242 61.6
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 5.0e-87 325.1 250 59.6
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 6.5e-87 324.7 244 64.3
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 8.5e-87 324.3 244 64.3
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.1e-86 323.9 257 58.8
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.5e-86 323.6 264 59.8
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 2.5e-86 322.8 254 59.8
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 5.5e-86 321.6 238 65.1
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 5.5e-86 321.6 255 58.8
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 7.2e-86 321.2 264 57.2
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.2e-86 321.2 265 60.8
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.7e-85 319.3 264 56.8
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 3.6e-85 318.9 242 60.7
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 4.7e-85 318.5 247 58.7
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 1.4e-84 317.0 239 63.6
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.3e-84 316.2 267 60.7
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.2e-83 313.9 242 59.1
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.5e-83 313.5 258 58.5
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 1.5e-83 313.5 232 62.1
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.0e-83 313.2 231 62.3
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 1.7e-82 310.1 241 61.0
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 4.9e-82 308.5 255 59.2
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-81 307.4 220 64.5
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 5.9e-80 301.6 254 56.3
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 2.3e-79 299.7 265 55.5
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 2.9e-79 299.3 267 57.7
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.0e-79 298.5 267 57.3
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 1.5e-78 297.0 202 68.8
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 2.5e-78 296.2 244 58.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 2.0e-75 286.6 262 55.0
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 5.7e-75 285.0 226 59.7
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 9.8e-75 284.3 266 51.1
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 9.2e-73 277.7 262 54.2
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.7e-72 276.2 254 54.3
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.0e-71 271.9 230 60.4
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 5.0e-71 271.9 202 63.4
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.5e-70 270.4 245 56.7
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 4.3e-70 268.9 241 54.8
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 7.8e-64 248.1 230 55.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.3e-62 242.3 249 48.6
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.8e-60 236.9 257 49.8
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 2.3e-60 236.5 208 56.7
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 6.8e-52 208.4 156 59.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 8.9e-52 208.0 207 53.1
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.1e-49 201.1 155 63.9
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.7e-48 196.4 155 61.9
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 1.6e-45 187.2 276 40.2
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 6.2e-45 185.3 154 58.4
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 2.9e-42 176.4 138 58.0
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 9.3e-41 171.4 133 63.2
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 9.3e-41 171.4 318 35.2
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 9.3e-41 171.4 127 61.4
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 1.3e-39 167.5 129 58.9
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.7e-39 167.2 126 63.5
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 3.0e-39 166.4 127 58.3
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.5e-38 164.1 130 57.7
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.1e-37 160.2 127 61.4
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 2.1e-37 160.2 135 54.1
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 9.0e-36 154.8 314 35.7
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 7.9e-32 141.7 120 59.2
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 3.9e-31 139.4 108 63.9
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.3e-26 124.4 138 47.1
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.7e-24 116.7 105 57.1
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 4.6e-24 115.9 90 60.0
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 5.8e-19 99.0 126 46.8
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 3.0e-15 86.7 59 67.8
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.9e-14 84.0 61 65.6
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 9.3e-09 65.1 191 31.4
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.8e-07 60.8 56 53.6
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 6.7e-07 58.9 106 34.9
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 3.3e-06 56.6 151 27.2
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.3e-06 56.2 126 30.2
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 9.7e-06 55.1 151 25.8


User provided reference genes

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