Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 9.6e-308 1059.3 524 100.0
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 7.9e-177 624.4 449 68.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.0e-172 609.8 436 68.3
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 9.4e-170 600.9 441 65.8
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.6e-167 592.8 429 65.5
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.4e-167 591.3 427 65.6
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.4e-167 591.3 447 63.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.4e-165 586.3 446 65.2
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 7.0e-165 584.7 435 67.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.2e-164 583.9 448 65.2
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 3.5e-164 582.4 429 66.4
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.0e-163 580.9 420 66.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.7e-163 580.1 432 67.4
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 5.0e-163 578.6 420 66.4
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.5e-162 576.2 448 63.4
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 4.2e-162 575.5 434 64.3
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.5e-162 575.1 436 65.6
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 7.2e-162 574.7 444 63.5
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.4e-162 574.3 442 64.9
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.4e-162 574.3 442 64.9
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.6e-161 573.5 444 63.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.7e-161 572.8 446 63.2
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 3.6e-161 572.4 432 63.4
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 6.1e-161 571.6 442 64.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 6.1e-161 571.6 422 65.6
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 8.0e-161 571.2 446 63.9
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.4e-160 570.5 432 63.9
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.8e-160 570.1 420 65.0
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.8e-160 570.1 432 64.6
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.8e-160 570.1 442 64.9
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 4.0e-160 568.9 477 60.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 4.0e-160 568.9 444 63.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 6.7e-160 568.2 438 63.2
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 8.8e-160 567.8 441 63.7
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.5e-159 567.0 433 66.5
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.5e-159 567.0 443 63.2
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.5e-159 567.0 446 62.8
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.0e-159 566.6 431 63.6
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 2.0e-159 566.6 432 64.4
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 2.6e-159 566.2 453 61.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.4e-159 565.5 428 65.7
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.7e-159 565.1 448 62.3
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.7e-159 564.3 444 63.5
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 9.7e-159 564.3 434 63.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-158 563.9 441 62.6
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.8e-158 562.8 441 62.6
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 3.7e-158 562.4 447 62.6
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.8e-158 562.0 444 63.1
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 4.8e-158 562.0 444 62.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 6.3e-158 561.6 443 62.8
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 8.2e-158 561.2 484 58.9
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.1e-157 560.8 434 64.7
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 2.4e-157 559.7 445 63.6
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.4e-157 559.7 449 63.3
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 4.1e-157 558.9 452 62.8
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 5.3e-157 558.5 440 62.5
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 7.0e-157 558.1 435 63.2
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 9.1e-157 557.8 447 63.1
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 9.1e-157 557.8 448 64.3
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-156 557.4 445 63.8
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.7e-156 556.2 432 64.4
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 3.5e-156 555.8 434 62.7
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.5e-156 555.4 441 62.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 4.5e-156 555.4 433 64.0
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 5.9e-156 555.1 434 63.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 7.7e-156 554.7 431 63.1
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.0e-155 554.3 441 61.9
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.3e-155 553.9 456 61.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.7e-155 553.5 445 63.4
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.2e-155 553.1 440 62.5
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.5e-154 549.7 444 62.6
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 5.5e-154 548.5 403 66.5
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.2e-154 548.1 423 62.6
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.1e-153 546.6 432 63.2
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 2.1e-153 546.6 451 59.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.3e-152 543.1 561 52.6
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 5.9e-148 528.5 413 62.0
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.0e-147 527.7 431 60.3
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 2.3e-147 526.6 442 60.6
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.3e-147 526.6 432 62.0
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.5e-146 523.1 392 64.8
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 6.3e-142 508.4 455 57.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.1e-141 505.8 431 58.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.3e-139 500.7 402 62.7
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 5.0e-139 498.8 432 58.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 3.3e-138 496.1 386 62.7
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 5.2e-136 488.8 389 63.8
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 6.8e-136 488.4 435 58.4
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.6e-135 486.5 420 59.3
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.7e-134 483.8 431 58.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 1.8e-133 480.3 356 64.6
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.4e-133 479.9 445 54.4
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.0e-127 460.3 357 66.4
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.0e-127 460.3 432 53.9
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.7e-124 449.9 402 58.0
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 3.5e-124 449.5 436 53.9
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 3.6e-121 439.5 345 63.5
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 8.1e-121 438.3 348 62.9
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.8e-120 437.2 346 62.7
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.3e-120 436.8 431 54.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.3e-120 436.8 425 54.4
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 9.9e-119 431.4 355 63.1
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.9e-118 429.9 429 52.4
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 5.4e-117 425.6 415 53.5
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 2.1e-116 423.7 339 60.5
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.9e-114 417.2 357 59.7
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 2.7e-108 396.7 463 48.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 8.7e-107 391.7 567 39.9
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.5e-106 390.2 321 60.4
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.8e-97 359.4 349 53.6
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 9.0e-96 355.1 432 45.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.5e-90 337.0 296 57.8
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 9.0e-88 328.6 286 57.3
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 5.1e-83 312.8 390 48.5
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.5e-82 310.5 294 56.5
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 4.3e-82 309.7 381 48.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.4e-80 304.7 282 55.0
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-77 294.3 260 57.3
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 9.3e-77 292.0 222 59.9
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.9e-74 284.3 350 46.6
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 3.7e-73 280.0 436 39.9
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.1e-72 276.6 440 37.7
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.3e-70 271.6 439 36.9
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.1e-69 268.5 477 36.9
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 3.2e-69 266.9 244 57.8
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.9e-66 257.7 407 39.1
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 9.1e-64 248.8 282 48.9
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 2.9e-62 243.8 221 57.0
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 5.5e-61 239.6 154 71.4
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 4.7e-60 236.5 431 36.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.4e-59 235.0 150 74.7
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.0e-58 231.1 156 70.5
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.2e-57 227.6 428 35.5
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.4e-55 220.3 372 37.4
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.2e-54 217.6 147 70.7
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.5e-53 213.0 190 57.4
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-49 201.8 134 71.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.4e-48 198.4 139 66.9
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 3.2e-45 187.2 268 43.7
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.2e-45 186.8 132 70.5
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 1.2e-39 168.7 121 66.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.5e-37 161.0 110 70.0
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 2.6e-26 124.4 128 56.2
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.3e-25 119.8 102 58.8
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 8.3e-25 119.4 104 59.6
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.4e-24 118.6 425 25.9
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.7e-22 111.7 85 62.4
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.6e-20 105.1 109 51.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 3.5e-15 87.4 131 41.2
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-11 75.1 75 53.3
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 2.6e-10 71.2 47 61.7
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.1e-08 65.9 48 64.6
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 3.2e-08 64.3 57 56.1
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 7.8e-07 59.7 52 53.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.7e-06 58.5 61 39.3
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 3.0e-06 57.8 61 39.3
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 3.9e-06 57.4 51 45.1


User provided reference genes

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