Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0165G010 Amborella trichopoda HOM05D002099 ORTHO05D002080 1.9e-69 265.8 137 100.0
ATR0048G072 Amborella trichopoda HOM05D061989 ORTHO05D002080 7.0e-32 141.0 93 80.6
SEGI_09886 Sequoiadendron giganteum HOM05D002099 ORTHO05D002080 2.1e-20 102.8 131 43.5
MBI11_g19463_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 6.1e-20 101.3 130 46.9
VMungo1383G2001 Vigna mungo HOM05D002099 ORTHO05D002080 6.1e-20 101.3 128 44.5
Glyma.09G250400 Glycine max HOM05D002099 ORTHO05D002080 1.2e-18 97.1 123 43.9
MD04G1244900 Malus domestica HOM05D002099 ORTHO05D002080 2.6e-18 95.9 136 41.2
MBI11_g39359_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 3.4e-18 95.5 130 48.5
PSO675G9338 Papaver somniferum HOM05D002099 ORTHO05D002080 5.7e-18 94.7 134 42.5
Phvul.008G054075 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 7.5e-18 94.4 128 43.0
Prupe.6G361500 Prunus persica HOM05D002099 ORTHO05D002080 7.5e-18 94.4 122 43.4
CSS0048982 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 9.7e-18 94.0 130 41.5
PSO017G0082 Papaver somniferum HOM05D002099 ORTHO05D002080 9.7e-18 94.0 134 42.5
TAR362G0096 Trochodendron aralioides HOM05D002099 ORTHO05D002080 9.7e-18 94.0 128 43.0
CANSAT54G1934 Cannabis sativa HOM05D002099 ORTHO05D002080 1.3e-17 93.6 129 41.1
Nn2g12612 Nelumbo nucifera HOM05D002099 ORTHO05D002080 2.8e-17 92.4 131 45.0
Aqoxy2G02749 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 4.8e-17 91.7 141 36.9
Glyma.18G242100 Glycine max HOM05D002099 ORTHO05D002080 1.1e-16 90.5 129 41.9
Haze_02117 Corylus avellana HOM05D002099 ORTHO05D002080 1.8e-16 89.7 126 41.3
Oeu046894.1 Olea europaea HOM05D002099 ORTHO05D002080 1.8e-16 89.7 132 38.6
RcHm_v2.0_Chr3g0447871 Rosa chinensis HOM05D002099 ORTHO05D002080 3.1e-16 89.0 153 37.3
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.1e-16 87.4 124 40.3
Dinv29097 Davidia involucrata HOM05D002099 ORTHO05D002080 3.5e-15 85.5 123 41.5
Lj1g0024785 Lotus japonicus HOM05D002099 ORTHO05D002080 1.3e-14 83.6 127 43.3
FvH4_6g00490 Fragaria vesca HOM05D002099 ORTHO05D002080 2.2e-14 82.8 146 36.3
FAN14G4226 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.2e-14 82.8 146 36.3
FAN09G2981 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.0e-14 81.6 146 35.6
Potri.013G085850 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.1e-13 80.5 130 32.3
Thecc.05G199100 Theobroma cacao HOM05D002099 ORTHO05D002080 1.1e-13 80.5 138 36.2
FAN05G4152 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.5e-13 80.1 146 37.0
Cc09_g03650 Coffea canephora HOM05D002099 ORTHO05D002080 5.5e-13 78.2 137 36.5
PGR031G1225 Punica granatum HOM05D002099 ORTHO05D002080 5.5e-13 78.2 139 33.8
Ca_07988_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 1.2e-12 77.0 124 41.1
Sabra13G0077900 Salix brachista HOM05D002099 ORTHO05D002080 1.2e-12 77.0 122 33.6
Atru.chr12.2088 Acer truncatum HOM05D002099 ORTHO05D002080 2.7e-12 75.9 133 36.1
ATR0568G171 Amborella trichopoda HOM05D061989 ORTHO05D002080 2.7e-12 75.9 39 92.3
arahy.Tifrunner.gnm1.ann1.U4C2R0 Arachis hypogaea HOM05D002099 ORTHO05D002080 1.0e-11 73.9 140 40.7
Ciclev10013740m.g Citrus clementina HOM05D002099 ORTHO05D002080 3.0e-11 72.4 131 32.8
Lalb_Chr03g0038621 Lupinus albus HOM05D002099 ORTHO05D002080 4.0e-11 72.0 123 39.8
Psat3g138200 Pisum sativum HOM05D002099 ORTHO05D002080 4.0e-11 72.0 117 38.5
CAN.G1191.11 Capsicum annuum HOM05D002099 ORTHO05D002080 6.8e-11 71.2 130 33.8
CAN.G1191.12 Capsicum annuum HOM05D002099 ORTHO05D002080 6.8e-11 71.2 130 33.8
arahy.Tifrunner.gnm1.ann1.05THYH Arachis hypogaea HOM05D002099 ORTHO05D002080 8.8e-11 70.9 140 39.3
AL6G27400 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 1.2e-10 70.5 128 39.1
AT5G16460 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 2.0e-10 69.7 128 38.3
Peaxi162Scf00048g00816 Petunia axillaris HOM05D002099 ORTHO05D002080 4.4e-10 68.6 128 32.8
TPR.G31800 Trifolium pratense HOM05D002099 ORTHO05D002080 4.4e-10 68.6 110 40.0
Medtr7g080030 Medicago truncatula HOM05D002099 ORTHO05D002080 5.7e-10 68.2 117 37.6
Gorai.012G028100 Gossypium raimondii HOM05D002099 ORTHO05D002080 7.5e-10 67.8 123 34.1
Rhsim05G0145900 Rhododendron simsii HOM05D002099 ORTHO05D002080 1.7e-09 66.6 146 34.9
TWI36G0914 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 2.2e-09 66.2 136 33.8
EL10Ac4g09964 Beta vulgaris HOM05D002099 ORTHO05D002080 2.8e-09 65.9 91 46.2
Lsat_1_v5_gn_9_49060 Lactuca sativa HOM05D002099 ORTHO05D002080 2.8e-09 65.9 103 39.8
Carub.0006s1466 Capsella rubella HOM05D002099 ORTHO05D002080 3.7e-09 65.5 119 38.7
Gohir.A05G391800 Gossypium hirsutum HOM05D002099 ORTHO05D002080 3.7e-09 65.5 123 33.3
Nitab4.5_0001435g0060 Nicotiana tabacum HOM05D002099 ORTHO05D002080 3.7e-09 65.5 125 34.4
C02p08360 Brassica napus HOM05D002099 ORTHO05D002080 4.8e-09 65.1 107 41.1
SHI13718 Sapria himalayana HOM05D002099 ORTHO05D002080 6.3e-09 64.7 140 32.1
Actinidia06808 Actinidia chinensis HOM05D002099 ORTHO05D002080 8.3e-09 64.3 131 35.1
BolC2t06753H Brassica oleracea HOM05D002099 ORTHO05D002080 8.3e-09 64.3 107 40.2
CsaV3_1G044520 Cucumis sativus L. HOM05D000081 ORTHO05D000036 2.4e-08 62.8 125 32.8
Thhalv10015351m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 4.1e-08 62.0 118 35.6
Cpa.g.sc39.11 Carica papaya HOM05D002099 ORTHO05D002080 5.4e-08 61.6 109 35.8
A03p07790 Brassica napus HOM05D002099 ORTHO05D002080 7.0e-08 61.2 120 35.0
BraA03t10106Z Brassica rapa HOM05D002099 ORTHO05D002080 7.0e-08 61.2 120 35.0
DCAR_002121 Daucus carota HOM05D002099 ORTHO05D002080 7.0e-08 61.2 95 37.9
vmacro19652 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 7.0e-08 61.2 94 41.5
BcaB01g04981 Brassica carinata HOM05D002099 ORTHO05D002080 1.6e-07 60.1 120 35.0
BolC3t13397H Brassica oleracea HOM05D002099 ORTHO05D002080 1.6e-07 60.1 120 35.0
Sp6g27720 Schrenkiella parvula HOM05D002099 ORTHO05D002080 1.6e-07 60.1 117 36.8
Manes.12G005700 Manihot esculenta HOM05D002099 ORTHO05D002080 2.0e-07 59.7 124 36.3
Solyc04g056380.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 2.0e-07 59.7 127 31.5
Sopen04g025290 Solanum pennellii HOM05D002099 ORTHO05D002080 2.0e-07 59.7 120 31.7
CARHR196790 Cardamine hirsuta HOM05D002099 ORTHO05D002080 3.5e-07 58.9 119 36.1
AUR62006654 Chenopodium quinoa HOM05D002099 ORTHO05D002080 4.5e-07 58.5 91 44.0
MELO3C010056.2 Cucumis melo HOM05D002099 ORTHO05D002080 5.9e-07 58.2 123 32.5
A02p03540 Brassica napus HOM05D002099 ORTHO05D002080 7.7e-07 57.8 105 39.0
C03p09010 Brassica napus HOM05D002099 ORTHO05D002080 7.7e-07 57.8 120 34.2
AUR62000310 Chenopodium quinoa HOM05D002099 ORTHO05D002080 1.0e-06 57.4 88 39.8
Aa31LG11G13200 Aethionema arabicum HOM05D002099 ORTHO05D002080 1.3e-06 57.0 123 35.0
BraA02t05325Z Brassica rapa HOM05D002099 ORTHO05D002080 2.3e-06 56.2 107 37.4


User provided reference genes

Program Settings