Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 3347.8 1733 100.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2415.2 1741 72.6
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2400.5 1723 72.4
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2286.1 1732 68.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2275.7 1731 68.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2262.3 1740 67.8
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2260.7 1736 68.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2242.2 1733 66.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2241.1 1742 67.8
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2240.7 1737 67.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2237.2 1738 66.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2233.0 1724 67.3
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1740 66.5
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2226.8 1730 67.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2226.4 1696 67.3
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2221.4 1733 66.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2217.2 1734 66.1
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2214.9 1481 73.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2212.2 1734 65.9
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2210.3 1724 67.6
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1736 66.9
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1738 65.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2204.1 1723 65.9
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2203.3 1734 65.7
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2199.1 1715 66.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2194.5 1742 65.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2183.7 1734 65.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1734 65.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2176.4 1737 65.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2166.0 1734 65.4
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2160.2 1754 65.3
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2154.4 1740 64.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2153.6 1738 64.7
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2152.5 1758 64.8
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2150.9 1700 66.6
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2142.5 1744 64.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2135.1 1717 65.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2132.1 1746 64.1
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2127.4 1727 64.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2126.7 1715 64.1
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2119.0 1742 64.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2108.6 1692 64.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2107.8 1729 62.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2107.0 1731 62.2
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 2102.4 1759 62.7
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2100.1 1751 63.5
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2098.2 1730 61.8
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2093.2 1731 63.1
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2090.8 1522 68.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2089.3 1706 64.5
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2089.3 1756 61.5
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2083.5 1688 64.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2082.8 1729 63.6
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2068.5 1706 63.9
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2058.1 1780 61.6
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2056.2 1803 60.8
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2051.9 1789 62.4
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2049.2 1740 61.8
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2043.9 1477 68.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2038.5 1673 63.2
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2021.5 1724 61.4
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2021.1 1718 61.8
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2015.4 1784 60.9
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2013.8 1689 61.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2000.7 1892 58.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2000.3 1676 61.8
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1999.6 1757 60.7
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1996.9 1685 61.4
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1990.7 1723 60.8
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1990.7 1688 61.6
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1990.7 1695 60.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1984.9 1637 62.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1983.4 1689 61.5
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1980.7 1404 69.7
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1975.3 1739 60.5
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1971.1 1731 59.6
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1969.9 1725 60.3
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1962.2 1691 60.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1958.7 1678 60.9
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1949.9 1668 61.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1924.8 1686 60.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1920.6 2149 52.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1883.6 1693 58.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1858.2 1282 69.4
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1858.2 1286 69.0
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1835.8 1483 60.7
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1828.9 1722 58.1
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1809.7 1742 56.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1785.0 1634 57.2
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1777.3 1147 74.4
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1765.4 1686 54.7
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1761.5 1447 62.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1760.3 1687 56.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1757.3 1728 54.5
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1752.3 1827 55.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1702.6 1649 54.0
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1624.0 1459 60.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1546.6 1755 53.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1502.3 1035 70.7
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1493.0 1074 67.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1377.5 926 71.5
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1376.7 1379 55.9
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1342.0 1159 62.9
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1291.9 1139 62.2
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1242.6 1139 60.7
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1194.9 945 69.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1096.6 901 61.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.0e-273 948.0 731 64.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-261 907.9 673 64.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.1e-259 901.4 813 62.4
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 5.2e-257 892.5 606 71.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 8.3e-231 805.4 542 73.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.7e-228 797.7 591 65.5
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.4e-208 729.9 847 42.3
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 5.1e-204 716.5 1597 32.2
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.3e-170 605.5 429 68.3
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 2.7e-149 534.6 366 71.9
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.5e-142 511.5 320 77.8
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.0e-140 504.2 630 53.0
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 4.5e-120 437.6 655 50.4
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 3.6e-117 427.9 891 31.6
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.2e-109 402.9 472 43.6
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.9e-106 391.7 694 36.3
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.9e-106 391.0 507 53.3
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.6e-99 368.6 241 74.3
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.2e-97 360.1 228 68.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.9e-94 352.4 328 59.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.1e-93 349.0 244 66.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-77 296.6 191 77.0
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 8.4e-74 283.9 416 48.8
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.7e-69 268.5 180 68.3
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 5.3e-60 238.0 153 73.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.3e-55 222.6 176 59.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-52 213.4 203 49.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 6.7e-39 167.9 459 35.7
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-38 166.8 129 55.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.4e-36 159.5 105 74.3
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.5e-35 156.8 167 50.9
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 5.9e-35 154.8 87 85.1
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 7.4e-30 137.9 124 56.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.7e-29 136.7 206 42.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.6e-27 130.2 124 48.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.6e-24 120.2 106 54.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.1e-24 119.8 89 66.3
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.4e-23 117.1 108 53.7
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.4e-23 117.1 63 90.5
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 2.3e-23 116.3 93 65.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-20 107.5 57 86.0
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.8e-20 106.7 214 35.5
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.2e-19 104.0 60 80.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 7.7e-19 101.3 80 58.8
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 2.5e-17 96.3 233 36.9
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 2.7e-16 92.8 62 75.8
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 8.8e-15 87.8 122 38.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 9.8e-14 84.3 53 71.7
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.3e-13 84.0 58 60.3
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 2.8e-13 82.8 50 76.0
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.6e-11 77.0 43 76.7
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.7e-11 76.3 46 76.1
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 5.9e-11 75.1 296 33.4
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 1.9e-09 70.1 54 59.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 5.5e-09 68.6 61 59.0
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 3.6e-08 65.9 110 44.5
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 4.7e-08 65.5 32 90.6
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 1.0e-07 64.3 165 30.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.4e-07 63.9 95 38.9
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.8e-07 63.5 322 28.6
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.8e-07 63.5 44 70.5
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.8e-07 63.5 57 54.4
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.0e-07 62.8 37 75.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.0e-07 62.8 38 76.3
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.2e-07 62.0 40 67.5
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 2.6e-06 59.7 34 79.4


User provided reference genes

Program Settings