Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.7e-124 447.6 226 100.0
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.9e-106 389.4 227 85.5
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.3e-104 383.3 223 83.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.1e-102 375.9 218 84.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 4.7e-102 374.8 226 82.7
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 6.2e-102 374.4 221 82.8
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-101 373.6 218 83.9
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.4e-101 373.2 221 82.8
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 224 82.6
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.8e-101 372.9 223 83.9
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.3e-101 372.5 219 83.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 3.1e-101 372.1 218 83.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 3.1e-101 372.1 218 83.5
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 6.8e-101 370.9 224 81.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.2e-100 370.2 223 82.5
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.0e-100 369.4 225 81.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.6e-100 369.0 226 81.4
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.6e-100 369.0 219 83.1
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.4e-100 368.6 223 81.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 4.4e-100 368.2 225 81.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.8e-100 367.9 226 81.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 5.8e-100 367.9 225 80.9
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 7.5e-100 367.5 216 84.3
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 7.5e-100 367.5 223 80.3
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.3e-99 366.7 219 82.2
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.3e-99 366.7 214 83.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.7e-99 366.3 226 80.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.2e-99 365.9 218 80.7
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.4e-99 364.4 223 81.2
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 6.4e-99 364.4 218 80.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.3e-99 364.0 218 80.7
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 8.3e-99 364.0 217 82.0
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.1e-98 363.6 214 81.8
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.4e-98 363.2 218 79.8
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.9e-98 362.8 258 72.1
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.4e-98 362.5 220 79.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.4e-98 362.5 214 81.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.2e-98 362.1 220 79.1
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.2e-98 362.1 220 79.1
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 4.1e-98 361.7 218 80.3
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.1e-98 361.7 218 79.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 4.1e-98 361.7 217 82.0
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 5.4e-98 361.3 221 80.5
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 7.1e-98 360.9 220 78.6
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 7.1e-98 360.9 220 78.6
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 7.1e-98 360.9 222 79.7
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 9.2e-98 360.5 220 78.2
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.2e-98 360.5 220 78.2
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 9.2e-98 360.5 219 77.6
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 9.2e-98 360.5 218 80.7
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.2e-97 360.1 218 78.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.2e-97 360.1 218 78.9
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.6e-97 359.8 223 78.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.6e-97 359.8 219 78.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.6e-97 359.8 219 80.8
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 6.0e-97 357.8 222 76.6
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.8e-97 357.5 216 81.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.8e-97 357.5 220 77.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.0e-96 357.1 223 77.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.0e-96 357.1 218 78.4
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.3e-96 356.7 221 80.1
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.3e-96 356.7 222 76.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.3e-96 356.7 218 78.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.3e-96 355.9 220 76.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.3e-96 355.9 261 69.7
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.0e-96 355.5 220 77.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 5.1e-96 354.8 219 77.2
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 5.1e-96 354.8 214 79.9
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.1e-96 354.8 215 79.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 6.6e-96 354.4 220 76.4
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 8.6e-96 354.0 220 77.3
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 8.6e-96 354.0 216 78.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.6e-94 348.6 216 75.5
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.2e-94 347.8 217 79.3
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 2.3e-93 345.9 219 76.3
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.1e-93 345.5 214 77.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 5.2e-93 344.7 226 74.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 6.8e-93 344.4 233 73.0
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 6.8e-93 344.4 226 75.7
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 8.9e-93 344.0 219 75.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-92 342.0 224 74.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.3e-91 340.1 221 75.1
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.3e-91 340.1 217 75.1
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.7e-91 339.7 218 74.3
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 4.9e-91 338.2 220 74.5
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 8.3e-91 337.4 218 74.3
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.4e-90 336.7 211 76.8
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.4e-90 336.7 211 76.8
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 3.5e-89 332.0 218 72.5
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.6e-89 331.6 268 63.4
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.6e-89 331.6 220 72.3
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.6e-89 331.6 220 73.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.6e-89 331.6 226 72.1
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.3e-88 330.1 221 75.1
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.3e-88 330.1 221 76.5
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.9e-88 328.6 226 73.0
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 6.6e-88 327.8 226 71.2
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 8.6e-88 327.4 218 71.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 8.6e-88 327.4 218 71.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-87 326.2 218 71.1
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 3.3e-87 325.5 218 71.1
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 9.6e-87 323.9 218 70.6
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.6e-86 323.2 226 74.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.1e-86 322.8 213 71.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.1e-85 318.9 189 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.2e-85 318.2 222 68.9
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 9.3e-82 307.4 216 68.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.3e-79 298.5 213 67.1
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-78 297.0 217 65.9
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.8e-78 295.8 216 68.5
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.4e-77 292.7 217 64.5
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.5e-76 290.0 215 64.2
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.0e-76 289.7 221 64.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.0e-76 289.7 177 78.5
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.6e-72 274.6 180 70.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.9e-67 258.5 223 59.6
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.8e-62 241.9 143 79.0
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 6.0e-57 224.9 235 50.6
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.1e-56 221.9 128 84.4
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 9.6e-55 217.6 129 80.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.3e-54 217.2 128 82.8
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.2e-52 210.7 125 80.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.8e-51 205.7 122 82.0
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.8e-48 196.8 154 66.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.4e-42 177.2 117 75.2
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 7.9e-41 171.4 124 63.7
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.0e-40 169.5 129 70.5
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.8e-38 162.2 105 71.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.1e-37 159.5 92 83.7
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.7e-36 154.8 91 81.3
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.5e-34 148.7 77 93.5
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.7e-33 146.4 95 74.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.6e-33 146.0 211 39.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.0e-32 144.4 164 45.7
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.3e-32 143.3 91 73.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.3e-30 135.2 189 39.7
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.1e-29 134.4 214 38.3
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.9e-27 126.3 219 36.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 5.0e-27 125.6 202 39.1
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 6.5e-27 125.2 93 66.7
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.5e-26 123.2 187 36.9
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 6.1e-25 118.6 195 39.5
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.8e-24 114.8 70 78.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.4e-23 112.5 214 35.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 5.7e-23 112.1 194 35.1
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 7.5e-23 111.7 71 71.8
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.7e-22 109.4 88 59.1
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.4e-21 107.5 170 35.9
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 7.0e-21 105.1 83 66.3
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-20 103.6 74 71.6
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.7e-20 103.2 65 76.9
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 6.5e-19 98.6 63 71.4
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.5e-18 95.5 72 65.3
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.4e-18 94.7 63 69.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 4.7e-17 92.4 61 75.4
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 8.0e-17 91.7 55 76.4
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.0e-16 91.3 59 76.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.7e-14 84.0 68 57.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.8e-14 83.2 50 80.0
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.9e-11 73.2 57 61.4
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.8e-11 72.8 66 54.5
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 5.0e-11 72.4 57 59.6
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 6.5e-11 72.0 68 50.0
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.1e-10 71.2 65 50.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.5e-10 70.9 64 51.6
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 4.2e-10 69.3 59 54.2
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.2e-09 67.8 57 54.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 1.8e-08 63.9 72 48.6
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.3e-08 63.5 39 76.9


User provided reference genes

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