Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.2e-72 274.6 143 100.0
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 9.8e-29 130.6 84 85.7
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 6.4e-20 101.3 87 62.1
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 6.4e-20 101.3 87 62.1
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 8.3e-20 100.9 87 62.1
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 8.3e-20 100.9 87 62.1
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 8.3e-20 100.9 87 62.1
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.1e-19 100.5 87 63.2
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 3.2e-19 99.0 87 60.9
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 3.2e-19 99.0 87 58.6
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 4.1e-19 98.6 87 59.8
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 4.1e-19 98.6 87 60.9
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 5.4e-19 98.2 120 49.2
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 5.4e-19 98.2 87 60.9
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 5.4e-19 98.2 87 59.8
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 7.0e-19 97.8 105 53.3
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 7.0e-19 97.8 87 59.8
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 9.2e-19 97.4 87 60.9
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 9.2e-19 97.4 87 60.9
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.2e-18 97.1 87 60.9
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 1.2e-18 97.1 87 60.9
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.2e-18 97.1 87 59.8
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.6e-18 96.7 88 58.0
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 1.6e-18 96.7 87 60.9
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.6e-18 96.7 87 59.8
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 1.6e-18 96.7 87 59.8
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 2.1e-18 96.3 87 58.6
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.1e-18 96.3 87 59.8
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 2.7e-18 95.9 87 58.6
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 2.7e-18 95.9 87 59.8
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 2.7e-18 95.9 87 59.8
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 3.5e-18 95.5 88 58.0
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 58.6
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 58.6
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 59.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 56.3
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 3.5e-18 95.5 120 49.2
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 58.6
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 3.5e-18 95.5 87 58.6
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 4.6e-18 95.1 87 60.9
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 4.6e-18 95.1 87 60.9
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 4.6e-18 95.1 84 58.3
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 4.6e-18 95.1 84 58.3
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 4.6e-18 95.1 84 58.3
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 4.6e-18 95.1 84 59.5
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 4.6e-18 95.1 88 58.0
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 4.6e-18 95.1 87 59.8
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 6.0e-18 94.7 87 57.5
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 6.0e-18 94.7 87 56.3
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 6.0e-18 94.7 85 60.0
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 6.0e-18 94.7 84 60.7
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 7.8e-18 94.4 84 58.3
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 7.8e-18 94.4 87 57.5
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 7.8e-18 94.4 87 57.5
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 7.8e-18 94.4 87 56.3
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.0e-17 94.0 87 58.6
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.0e-17 94.0 87 58.6
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 1.0e-17 94.0 83 56.6
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 1.0e-17 94.0 87 60.9
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.3e-17 93.6 87 57.5
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 1.3e-17 93.6 87 58.6
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 1.3e-17 93.6 87 58.6
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.3e-17 93.6 87 58.6
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 1.3e-17 93.6 84 59.5
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.7e-17 93.2 87 56.3
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 1.7e-17 93.2 84 58.3
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.7e-17 93.2 87 57.5
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 2.3e-17 92.8 85 58.8
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 2.3e-17 92.8 84 57.1
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.3e-17 92.8 87 56.3
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.3e-17 92.8 87 58.6
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 2.3e-17 92.8 86 58.1
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.0e-17 92.4 87 59.8
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 3.0e-17 92.4 87 57.5
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 3.9e-17 92.0 87 57.5
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 3.9e-17 92.0 84 58.3
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 3.9e-17 92.0 84 58.3
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.9e-17 92.0 87 57.5
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 3.9e-17 92.0 87 57.5
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 3.9e-17 92.0 87 56.3
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 5.0e-17 91.7 87 57.5
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 6.6e-17 91.3 87 56.3
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 6.6e-17 91.3 87 56.3
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 8.6e-17 90.9 87 56.3
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 8.6e-17 90.9 87 57.5
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 8.6e-17 90.9 87 57.5
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 8.6e-17 90.9 87 56.3
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 8.6e-17 90.9 87 56.3
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 1.1e-16 90.5 86 60.5
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 1.9e-16 89.7 84 57.1
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 2.5e-16 89.4 84 57.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.5e-16 89.4 84 57.1
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 2.5e-16 89.4 84 58.3
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.5e-16 89.4 87 58.6
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 2.5e-16 89.4 87 58.6
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 2.5e-16 89.4 87 58.6
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 2.5e-16 89.4 87 58.6
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 2.5e-16 89.4 87 57.5
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 4.3e-16 88.6 89 52.8
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 4.3e-16 88.6 102 51.0
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 4.3e-16 88.6 87 55.2
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 5.6e-16 88.2 87 58.6
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 5.6e-16 88.2 89 52.8
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 5.6e-16 88.2 87 55.2
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 5.6e-16 88.2 83 53.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 7.3e-16 87.8 84 52.4
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 7.3e-16 87.8 83 56.6
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 1.2e-15 87.0 85 55.3
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 1.6e-15 86.7 83 54.2
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 2.1e-15 86.3 100 49.0
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 3.6e-15 85.5 88 52.3
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.1e-14 84.0 87 52.9
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.8e-14 83.2 84 48.8
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 2.3e-14 82.8 116 39.7
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 2.3e-14 82.8 87 51.7
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 6.8e-14 81.3 87 46.0
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 8.9e-14 80.9 87 52.9
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 1.2e-13 80.5 87 52.9
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.6e-13 79.3 84 50.0
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 7.5e-13 77.8 87 51.7
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 1.3e-12 77.0 87 51.7
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 1.7e-12 76.6 88 52.3
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 2.9e-12 75.9 99 43.4
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 2.9e-12 75.9 83 51.8
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 6.4e-12 74.7 77 54.5
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 8.3e-12 74.3 80 52.5
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 4.6e-10 68.6 83 47.0
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 7.8e-10 67.8 84 44.0
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 5.6e-08 61.6 55 60.0


User provided reference genes

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