Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 9.5e-40 166.4 84 100.0
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 7.8e-26 120.2 91 69.2
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 1.3e-25 119.4 90 70.0
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.9e-24 115.5 89 67.4
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 7.3e-24 113.6 91 70.3
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 1.2e-23 112.8 80 68.8
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 1.2e-23 112.8 91 65.9
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 2.8e-23 111.7 88 67.0
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 4.7e-23 110.9 90 68.9
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 6.2e-23 110.5 82 68.3
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 8.1e-23 110.2 84 67.9
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 8.1e-23 110.2 84 67.9
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 1.1e-22 109.8 92 63.0
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 1.1e-22 109.8 99 64.6
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.4e-22 109.4 81 67.9
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.4e-22 109.4 90 65.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.4e-22 109.4 92 64.1
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 1.8e-22 109.0 68 76.5
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.8e-22 109.0 68 76.5
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.8e-22 109.0 92 66.3
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 1.8e-22 109.0 95 62.1
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 1.8e-22 109.0 87 65.5
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 1.8e-22 109.0 89 66.3
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 2.3e-22 108.6 102 57.8
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 2.3e-22 108.6 82 67.1
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.3e-22 108.6 92 65.2
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 3.1e-22 108.2 92 64.1
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 3.1e-22 108.2 87 63.2
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 3.1e-22 108.2 81 67.9
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 3.1e-22 108.2 62 85.5
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 4.0e-22 107.8 92 60.9
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 4.0e-22 107.8 90 68.9
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.0e-22 107.8 89 64.0
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 4.0e-22 107.8 70 74.3
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 4.0e-22 107.8 83 69.9
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 5.2e-22 107.5 84 65.5
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 5.2e-22 107.5 92 65.2
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 5.2e-22 107.5 100 59.0
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 6.8e-22 107.1 95 61.1
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.8e-22 107.1 87 64.4
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 8.9e-22 106.7 93 61.3
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 8.9e-22 106.7 95 63.2
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 8.9e-22 106.7 93 62.4
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 1.2e-21 106.3 70 77.1
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.2e-21 106.3 92 65.2
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 1.2e-21 106.3 59 84.7
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 1.5e-21 105.9 94 58.5
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 1.5e-21 105.9 69 73.9
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 1.5e-21 105.9 86 67.4
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.5e-21 105.9 59 84.7
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 2.0e-21 105.5 70 72.9
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 2.6e-21 105.1 95 57.9
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 2.6e-21 105.1 95 57.9
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 2.6e-21 105.1 66 74.2
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 2.6e-21 105.1 66 74.2
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 3.4e-21 104.8 85 65.9
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 3.4e-21 104.8 95 61.1
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 3.4e-21 104.8 92 64.1
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 3.4e-21 104.8 92 64.1
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.4e-21 104.4 55 87.3
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 5.8e-21 104.0 97 57.7
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 5.8e-21 104.0 84 66.7
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 7.5e-21 103.6 71 70.4
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 7.5e-21 103.6 97 56.7
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 7.5e-21 103.6 82 65.9
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 7.5e-21 103.6 97 57.7
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 9.9e-21 103.2 95 56.8
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 9.9e-21 103.2 93 64.5
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 9.9e-21 103.2 82 63.4
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 1.3e-20 102.8 97 56.7
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.7e-20 102.4 92 58.7
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 2.2e-20 102.1 97 58.8
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 2.2e-20 102.1 81 67.9
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 2.9e-20 101.7 92 58.7
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 2.9e-20 101.7 100 57.0
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 4.9e-20 100.9 84 66.7
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 6.4e-20 100.5 101 54.5
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 8.3e-20 100.1 82 57.3
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 8.3e-20 100.1 56 78.6
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 1.1e-19 99.8 82 56.1
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 2.4e-19 98.6 97 55.7
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 2.4e-19 98.6 97 55.7
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 1.6e-18 95.9 91 58.2
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 1.0e-17 93.2 54 77.8
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 5.1e-17 90.9 75 62.7
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 3.3e-16 88.2 79 60.8
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 4.3e-16 87.8 69 60.9
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 3.6e-15 84.7 78 60.3
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 6.2e-15 84.0 61 68.9
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 8.1e-15 83.6 58 69.0
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 1.1e-14 83.2 74 63.5
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 1.1e-14 83.2 58 72.4
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.1e-14 83.2 80 60.0
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.4e-14 82.8 70 62.9
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 2.4e-14 82.0 102 50.0
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 6.8e-14 80.5 75 60.0
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 8.9e-14 80.1 81 55.6
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 8.9e-14 80.1 84 57.1
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 1.2e-13 79.7 66 62.1
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 3.4e-13 78.2 88 53.4
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 3.4e-13 78.2 76 56.6
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 9.9e-13 76.6 74 60.8
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 9.9e-13 76.6 77 59.7
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 1.3e-12 76.3 51 68.6
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 4.9e-12 74.3 50 76.0
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 8.4e-12 73.6 52 71.2
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 1.9e-11 72.4 80 51.2
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 4.1e-11 71.2 82 51.2
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 2.1e-10 68.9 83 53.0
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.8e-07 58.5 45 66.7
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 2.8e-07 58.5 45 66.7
CSS0048161 Camellia sinensis var. sinensis HOM05D007113 ORTHO05D008859 4.0e-06 54.7 55 56.4
Pp3c2_9610 Physcomitrium patens HOM05D007135 ORTHO05D008880 4.0e-06 54.7 56 55.4
CDE03G0108 Ceratophyllum demersum HOM05D007113 ORTHO05D008859 5.2e-06 54.3 56 55.4
Nitab4.5_0008493g0040 Nicotiana tabacum HOM05D007113 ORTHO05D008859 9.0e-06 53.5 71 46.5


User provided reference genes

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