Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0147G014 Amborella trichopoda HOM05D002848 ORTHO05D003043 1.2e-87 326.6 180 100.0
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 4.0e-19 99.0 141 45.4
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 2.0e-18 96.7 141 46.8
Nn6g32298 Nelumbo nucifera HOM05D002848 ORTHO05D003043 4.4e-18 95.5 134 43.3
Aqoxy6G02321 Aquilegia oxysepala HOM05D002848 ORTHO05D003043 7.5e-18 94.7 129 47.3
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 9.2e-16 87.8 128 42.2
PSO541G4561 Papaver somniferum HOM05D002848 ORTHO05D003043 1.0e-14 84.3 128 40.6
Manes.18G015900 Manihot esculenta HOM05D002848 ORTHO05D003043 1.7e-14 83.6 129 45.7
Manes.18G016000 Manihot esculenta HOM05D002848 ORTHO05D003043 1.7e-14 83.6 139 43.9
PGR083G2521 Punica granatum HOM05D002848 ORTHO05D003043 1.7e-14 83.6 124 47.6
Dinv39498 Davidia involucrata HOM05D002848 ORTHO05D003043 6.6e-14 81.6 131 42.7
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 1.1e-13 80.9 130 41.5
Haze_22606 Corylus avellana HOM05D002848 ORTHO05D003043 1.1e-13 80.9 143 39.9
Ciclev10000970m.g Citrus clementina HOM05D002848 ORTHO05D003043 2.5e-13 79.7 128 45.3
Cpa.g.sc26.22 Carica papaya HOM05D000113 ORTHO05D003010 4.3e-13 79.0 137 43.1
Duzib041G0763 Durio zibethinus HOM05D002848 ORTHO05D003043 4.3e-13 79.0 133 42.9
Actinidia15403 Actinidia chinensis HOM05D002848 ORTHO05D003043 5.6e-13 78.6 130 39.2
MBI05_g26506_MAGBIO Magnolia biondii HOM05D002848 ORTHO05D003043 5.6e-13 78.6 145 40.7
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 5.6e-13 78.6 123 41.5
QL02p010998 Quercus lobata HOM05D002848 ORTHO05D003043 9.5e-13 77.8 123 43.1
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 9.5e-13 77.8 136 44.1
Cfa013922 Carpinus fangiana HOM05D002848 ORTHO05D003043 1.2e-12 77.4 135 40.0
CDE08G1142 Ceratophyllum demersum HOM05D002848 ORTHO05D003043 1.6e-12 77.0 139 43.2
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 3.6e-12 75.9 130 38.5
Duzib093G1695 Durio zibethinus HOM05D002848 ORTHO05D003043 6.2e-12 75.1 124 45.2
Potri.005G236300 Populus trichocarpa HOM05D002848 ORTHO05D003043 8.0e-12 74.7 129 42.6
Eucgr.F01630 Eucalyptus grandis HOM05D002848 ORTHO05D003043 1.1e-11 74.3 134 38.1
Prupe.7G166800 Prunus persica HOM05D002848 ORTHO05D003043 1.8e-11 73.6 127 40.9
Lj4C217G5 Lonicera japonica HOM05D002848 ORTHO05D003043 2.3e-11 73.2 129 40.3
CiPaw.09G133400 Carya illinoinensis HOM05D002848 ORTHO05D003043 3.1e-11 72.8 136 36.8
Dinv31824 Davidia involucrata HOM05D002848 ORTHO05D003043 3.1e-11 72.8 135 38.5
Thecc.01G021000 Theobroma cacao HOM05D002848 ORTHO05D003043 3.1e-11 72.8 127 39.4
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 4.0e-11 72.4 126 43.7
Hma1.2p1_0337F.1_g129100 Hydrangea macrophylla HOM05D002848 ORTHO05D003043 5.2e-11 72.0 130 40.0
EL10As8g23840 Beta vulgaris HOM05D002848 ORTHO05D003043 6.8e-11 71.6 123 42.3
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 6.8e-11 71.6 133 39.8
Sabra05G0182700 Salix brachista HOM05D002848 ORTHO05D003043 6.8e-11 71.6 131 44.3
vmacro21915 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 6.8e-11 71.6 146 39.0
Gohir.A01G112600 Gossypium hirsutum HOM05D002848 ORTHO05D003043 8.9e-11 71.2 129 42.6
HPP92_002103 Vanilla planifolia HOM05D002848 ORTHO05D003043 1.2e-10 70.9 123 43.9
Peaxi162Scf00064g00626 Petunia axillaris HOM05D002848 ORTHO05D003043 1.5e-10 70.5 147 35.4
Prupe.1G368900 Prunus persica HOM05D002848 ORTHO05D003043 1.5e-10 70.5 131 39.7
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.0e-10 70.1 127 37.0
Gohir.D11G184300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.0e-10 70.1 127 37.0
Gorai.007G196000 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.0e-10 70.1 127 37.0
Zm00001eb433000 Zea mays HOM05D002848 ORTHO05D003043 3.4e-10 69.3 136 31.6
arahy.Tifrunner.gnm1.ann1.0H5DHB Arachis hypogaea HOM05D002848 ORTHO05D003043 5.8e-10 68.6 128 37.5
arahy.Tifrunner.gnm1.ann1.9DZU8H Arachis hypogaea HOM05D002848 ORTHO05D003043 5.8e-10 68.6 128 37.5
MD08G1015700 Malus domestica HOM05D002848 ORTHO05D003043 5.8e-10 68.6 136 37.5
Medtr8g076080 Medicago truncatula HOM05D002848 ORTHO05D003043 5.8e-10 68.6 134 35.1
CSS0044135 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 7.5e-10 68.2 125 41.6
Manes.02G102900 Manihot esculenta HOM05D002848 ORTHO05D003043 7.5e-10 68.2 127 37.8
GSVIVG01018802001 Vitis vinifera HOM05D002848 ORTHO05D003043 1.3e-09 67.4 128 39.8
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 2.2e-09 66.6 144 38.2
Duzib116G0954 Durio zibethinus HOM05D002848 ORTHO05D003043 2.2e-09 66.6 124 41.1
Thhalv10010301m.g Eutrema salsugineum HOM05D002848 ORTHO05D003043 2.2e-09 66.6 124 37.9
Atru.chr13.328 Acer truncatum HOM05D002848 ORTHO05D003043 2.9e-09 66.2 128 38.3
Cfa006959 Carpinus fangiana HOM05D002848 ORTHO05D003043 2.9e-09 66.2 127 37.8
Gohir.D02G097800 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.9e-09 66.2 124 41.1
Gorai.005G111400 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.9e-09 66.2 124 41.1
Gohir.A02G088501 Gossypium hirsutum HOM05D002848 ORTHO05D003043 3.7e-09 65.9 124 41.1
Potri.002G025100 Populus trichocarpa HOM05D002848 ORTHO05D003043 3.7e-09 65.9 127 40.9
Haze_03792 Corylus avellana HOM05D002848 ORTHO05D003043 4.9e-09 65.5 127 37.0
CsaV3_2G029390 Cucumis sativus L. HOM05D002848 ORTHO05D003043 4.9e-09 65.5 127 40.9
ClCG01G020100 Citrullus lanatus HOM05D002848 ORTHO05D003043 6.4e-09 65.1 123 39.8
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 6.4e-09 65.1 128 39.8
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 6.4e-09 65.1 140 36.4
Cc10_g01940 Coffea canephora HOM05D002848 ORTHO05D003043 8.3e-09 64.7 122 36.1
MD02G1134000 Malus domestica HOM05D002848 ORTHO05D003043 8.3e-09 64.7 141 37.6
Potri.007G013600 Populus trichocarpa HOM05D002848 ORTHO05D003043 1.1e-08 64.3 131 36.6
RcHm_v2.0_Chr6g0302461 Rosa chinensis HOM05D002848 ORTHO05D003043 1.1e-08 64.3 136 41.2
AL5G31600 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.4e-08 63.9 123 34.1
Aa31LG4G19250 Aethionema arabicum HOM05D002848 ORTHO05D003043 1.9e-08 63.5 125 38.4
Cc07_g10590 Coffea canephora HOM05D002848 ORTHO05D003043 1.9e-08 63.5 126 39.7
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.9e-08 63.5 129 38.8
SEGI_36244 Sequoiadendron giganteum HOM05D002848 ORTHO05D003043 1.9e-08 63.5 50 62.0
Gohir.D01G099400 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.4e-08 63.2 128 39.1
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 2.4e-08 63.2 135 37.0
Dinv40073 Davidia involucrata HOM05D002848 ORTHO05D003043 3.2e-08 62.8 48 64.6
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 3.2e-08 62.8 132 34.1
MD15G1014600 Malus domestica HOM05D002848 ORTHO05D003043 3.2e-08 62.8 137 37.2
Rhsim06G0023800 Rhododendron simsii HOM05D002848 ORTHO05D003043 3.2e-08 62.8 130 40.0
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 3.2e-08 62.8 126 35.7
AT3G51180 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 4.1e-08 62.4 132 35.6
ClCG01G020170 Citrullus lanatus HOM05D002848 ORTHO05D003043 4.1e-08 62.4 118 40.7
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 5.4e-08 62.0 130 36.2
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 7.0e-08 61.6 130 35.4
Zm00001eb067340 Zea mays HOM05D002848 ORTHO05D003043 7.0e-08 61.6 135 33.3
MSTRG.1211 Avicennia marina HOM05D002848 ORTHO05D003043 9.2e-08 61.2 129 32.6
BolC8t50261H Brassica oleracea HOM05D002848 ORTHO05D003043 9.2e-08 61.2 124 35.5
TPR.G30055 Trifolium pratense HOM05D002848 ORTHO05D003043 9.2e-08 61.2 124 37.1
Oeu046254.1 Olea europaea HOM05D002848 ORTHO05D003043 1.2e-07 60.8 134 35.8
Phvul.009G015300 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 1.2e-07 60.8 125 39.2
Dinv33617 Davidia involucrata HOM05D002848 ORTHO05D003043 1.6e-07 60.5 132 39.4
Psat4g098440 Pisum sativum HOM05D002848 ORTHO05D003043 1.6e-07 60.5 131 35.1
C08p26460 Brassica napus HOM05D002848 ORTHO05D003043 2.0e-07 60.1 124 35.5
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 2.7e-07 59.7 123 35.8
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.7e-07 59.7 110 35.5
QL06p033603 Quercus lobata HOM05D002848 ORTHO05D003043 3.5e-07 59.3 128 37.5
VMungo1309G0824 Vigna mungo HOM05D002848 ORTHO05D003043 3.5e-07 59.3 125 35.2
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 4.6e-07 58.9 131 34.4
MELO3C007883.2 Cucumis melo HOM05D002848 ORTHO05D003043 4.6e-07 58.9 124 34.7
Duzib147G0092 Durio zibethinus HOM05D002848 ORTHO05D003043 4.6e-07 58.9 127 37.0
FAN28G1861 Fragaria x ananassa HOM05D002848 ORTHO05D003043 4.6e-07 58.9 132 35.6
Lsat_1_v5_gn_8_31441 Lactuca sativa HOM05D002848 ORTHO05D003043 4.6e-07 58.9 131 35.1
PGSC0003DMG400029424 Solanum tuberosum HOM05D002848 ORTHO05D003043 4.6e-07 58.9 139 33.8
Carub.0005s1757 Capsella rubella HOM05D002848 ORTHO05D003043 6.0e-07 58.5 123 30.9
CsaV3_6G046870 Cucumis sativus L. HOM05D002848 ORTHO05D003043 6.0e-07 58.5 143 35.7
DCAR_009936 Daucus carota HOM05D002848 ORTHO05D003043 6.0e-07 58.5 143 32.2
Lj1g0005660 Lotus japonicus HOM05D002848 ORTHO05D003043 6.0e-07 58.5 133 36.8
Sp5g11040 Schrenkiella parvula HOM05D002848 ORTHO05D003043 6.0e-07 58.5 123 33.3
Sopen12g031140 Solanum pennellii HOM05D002848 ORTHO05D003043 6.0e-07 58.5 143 28.0
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 7.8e-07 58.2 147 31.3
MELO3C007890.2 Cucumis melo HOM05D002848 ORTHO05D003043 7.8e-07 58.2 124 37.1
CsaV3_6G046970 Cucumis sativus L. HOM05D002848 ORTHO05D003043 7.8e-07 58.2 124 36.3
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 7.8e-07 58.2 137 34.3
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 7.8e-07 58.2 119 37.8
Solyc12g089260.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 7.8e-07 58.2 140 30.7
Gohir.A06G005500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.0e-06 57.8 102 37.3
vmacro21710 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 1.0e-06 57.8 139 33.8
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.3e-06 57.4 110 34.5
BraA09t39883Z Brassica rapa HOM05D002848 ORTHO05D003043 1.7e-06 57.0 124 33.9
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 2.3e-06 56.6 136 35.3
Ca_19632_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 3.0e-06 56.2 124 32.3
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 3.9e-06 55.8 132 33.3
FAN27G1307 Fragaria x ananassa HOM05D002848 ORTHO05D003043 3.9e-06 55.8 133 38.3
Glyma.02G049600 Glycine max HOM05D002848 ORTHO05D003043 3.9e-06 55.8 129 33.3
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 3.9e-06 55.8 130 30.0
Sp2g30310 Schrenkiella parvula HOM05D002848 ORTHO05D003043 3.9e-06 55.8 52 50.0
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 5.0e-06 55.5 130 35.4
Ca_13279_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 5.0e-06 55.5 126 38.1
A09p44220 Brassica napus HOM05D002848 ORTHO05D003043 6.6e-06 55.1 126 33.3
CiPaw.08G132900 Carya illinoinensis HOM05D002848 ORTHO05D003043 6.6e-06 55.1 131 32.8
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 6.6e-06 55.1 56 53.6
BcaB01g00544 Brassica carinata HOM05D002848 ORTHO05D003043 8.6e-06 54.7 123 33.3
CANSAT25G2982 Cannabis sativa HOM05D002848 ORTHO05D003043 8.6e-06 54.7 135 33.3
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 8.6e-06 54.7 128 36.7
FAN26G0229 Fragaria x ananassa HOM05D002848 ORTHO05D003043 8.6e-06 54.7 133 33.1
THA.LOC104819181 Tarenaya hassleriana HOM05D002848 ORTHO05D003043 8.6e-06 54.7 124 34.7


User provided reference genes

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