Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 0.0e+00 1155.2 607 100.0
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 2.7e-67 260.8 607 38.4
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 1.2e-64 251.9 605 37.5
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 1.3e-58 231.9 627 35.4
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 3.9e-58 230.3 616 34.7
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 6.2e-56 223.0 607 34.3
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 6.2e-56 223.0 618 34.0
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 3.1e-55 220.7 603 35.2
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 9.8e-54 215.7 639 34.9
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 1.1e-52 212.2 614 35.5
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 1.4e-52 211.8 588 35.0
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 3.2e-52 210.7 606 35.0
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 6.0e-51 206.5 624 33.8
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 6.0e-51 206.5 612 34.2
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 6.0e-51 206.5 718 32.6
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 2.3e-50 204.5 569 35.0
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 3.0e-50 204.1 607 33.8
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 5.1e-50 203.4 592 33.6
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 5.1e-50 203.4 598 34.1
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 5.6e-49 199.9 587 34.8
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 5.6e-49 199.9 605 33.4
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 2.3e-47 194.5 606 33.7
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 5.2e-47 193.4 635 32.6
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 1.2e-46 192.2 614 32.2
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 1.5e-46 191.8 607 31.0
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 1.5e-46 191.8 587 33.4
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 1.5e-46 191.8 598 33.1
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 2.0e-46 191.4 592 33.4
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 2.6e-46 191.0 603 33.0
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 9.9e-46 189.1 631 31.4
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 6.4e-45 186.4 654 30.7
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.4e-44 185.3 596 32.9
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.9e-44 184.9 654 31.0
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.9e-44 184.9 654 31.0
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 3.2e-44 184.1 613 33.4
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 4.1e-44 183.7 609 32.3
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 7.1e-44 183.0 627 32.2
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 7.1e-44 183.0 603 33.2
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 9.2e-44 182.6 591 32.3
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 1.2e-43 182.2 637 31.4
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 1.6e-43 181.8 602 32.2
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 6.0e-43 179.9 623 32.4
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 7.8e-43 179.5 604 31.6
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 7.8e-43 179.5 606 32.2
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.0e-42 179.1 606 31.8
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 1.3e-42 178.7 698 31.2
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.3e-42 177.9 626 32.6
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.3e-42 177.9 656 30.9
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 5.1e-42 176.8 670 31.8
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 6.6e-42 176.4 614 33.4
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 8.6e-42 176.0 588 34.4
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.1e-41 175.6 613 33.1
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 1.9e-41 174.9 597 32.3
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 2.5e-41 174.5 606 31.2
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 2.5e-41 174.5 608 32.1
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 3.3e-41 174.1 592 30.9
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 9.6e-41 172.6 594 31.0
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.2e-40 172.2 593 32.5
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 2.1e-40 171.4 615 32.0
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 1.1e-39 169.1 604 32.0
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 1.8e-39 168.3 609 31.0
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 1.8e-39 168.3 602 32.1
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 2.4e-39 167.9 655 30.4
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 1.2e-38 165.6 639 31.1
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 1.2e-38 165.6 613 32.0
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 1.5e-38 165.2 641 29.8
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 3.4e-38 164.1 612 32.7
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 3.4e-38 164.1 625 30.6
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 2.2e-37 161.4 630 31.0
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 2.9e-37 161.0 625 30.9
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 6.4e-37 159.8 609 30.7
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.1e-36 159.1 623 30.3
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 7.1e-36 156.4 584 31.2
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 7.1e-36 156.4 596 31.5
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 2.1e-35 154.8 624 29.6
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 2.7e-35 154.5 680 29.4
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 3.5e-35 154.1 635 29.1
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 6.0e-35 153.3 620 30.8
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 6.0e-35 153.3 583 30.4
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 6.0e-35 153.3 589 29.9
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 7.8e-35 152.9 592 29.7
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 7.8e-35 152.9 592 29.7
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 5.1e-34 150.2 584 31.5
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 6.6e-34 149.8 687 27.4
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.7e-34 149.4 675 27.0
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 1.1e-33 149.1 608 31.4
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 1.1e-33 149.1 588 31.3
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 1.5e-33 148.7 595 30.8
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.9e-33 148.3 577 31.0
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 2.5e-33 147.9 593 31.9
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 5.6e-33 146.7 612 30.4
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 5.6e-33 146.7 592 28.9
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 2.8e-32 144.4 608 30.1
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.6e-32 144.1 678 27.1
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 8.1e-32 142.9 572 31.3
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 1.8e-31 141.7 580 30.0
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 4.0e-31 140.6 603 30.3
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 5.3e-31 140.2 610 30.8
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 9.0e-31 139.4 602 30.1
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 9.0e-31 139.4 600 30.2
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 2.0e-30 138.3 604 29.0
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 2.6e-30 137.9 584 30.3
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.7e-29 135.2 601 30.9
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 9.3e-28 129.4 712 25.8
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 9.3e-28 129.4 621 30.0
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 7.9e-27 126.3 188 47.3
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 1.1e-25 122.5 572 28.0
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 1.5e-25 122.1 578 27.9
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 1.9e-25 121.7 572 28.0
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 1.9e-25 121.7 511 30.1
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 4.3e-25 120.6 568 28.0
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 5.6e-25 120.2 571 29.8
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.3e-24 119.0 609 28.1
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.3e-24 119.0 515 28.0
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 1.6e-24 118.6 588 28.6
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 2.8e-24 117.9 577 28.9
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.6e-24 117.5 591 27.7
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 2.4e-23 114.8 645 27.9
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.1e-23 114.4 591 28.3
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.2e-22 112.5 577 28.2
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 2.0e-22 111.7 568 28.9
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 2.0e-22 111.7 645 26.8
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 4.5e-22 110.5 563 27.7
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 5.8e-22 110.2 645 27.0
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 1.3e-21 109.0 379 33.5
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 1.7e-21 108.6 568 27.8
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 2.9e-21 107.8 574 28.6
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 6.4e-21 106.7 416 33.7
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 6.4e-21 106.7 603 29.0
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 8.4e-21 106.3 579 29.0
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 3.2e-20 104.4 573 28.3
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 3.2e-20 104.4 601 29.1
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 4.2e-20 104.0 570 27.9
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 4.2e-20 104.0 570 27.9
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 4.2e-20 104.0 570 27.9
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 7.1e-20 103.2 568 27.5
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 4.6e-19 100.5 574 27.4
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 7.9e-19 99.8 692 25.3
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.0e-18 99.4 327 31.5
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.0e-18 99.4 253 34.0
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.8e-18 98.6 417 30.0
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 1.8e-18 98.6 576 27.8
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 2.3e-18 98.2 554 27.1
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 6.7e-18 96.7 580 28.1
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 6.7e-18 96.7 507 30.0
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 1.9e-17 95.1 426 27.5
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 9.6e-17 92.8 578 26.8
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 9.6e-17 92.8 608 27.8
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 8.1e-16 89.7 574 27.9
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 1.1e-15 89.4 575 26.1
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 1.1e-15 89.4 572 26.6
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 2.4e-15 88.2 575 26.6
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 1.5e-14 85.5 341 29.6
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 2.6e-14 84.7 548 26.5
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 3.4e-14 84.3 517 27.1
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 4.9e-13 80.5 133 45.9
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 4.9e-13 80.5 119 47.9
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 2.1e-11 75.1 62 56.5
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 1.8e-10 72.0 79 58.2
Phvul.009G189500 Phaseolus vulgaris HOM05D002126 ORTHO05D002195 1.5e-09 68.9 211 31.3
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 1.9e-09 68.6 387 25.6
VMungo1309G0316 Vigna mungo HOM05D002126 ORTHO05D002195 2.1e-08 65.1 210 31.9
Prupe.5G188300 Prunus persica HOM05D002126 ORTHO05D002195 1.8e-07 62.0 122 41.0
Zm00001eb356480 Zea mays HOM05D002126 ORTHO05D002195 2.0e-06 58.5 140 38.6
TWI81G0736 Tripterygium wilfordii HOM05D002126 ORTHO05D002195 2.6e-06 58.2 136 36.8
Sc04g0002510 Simmondsia chinensis HOM05D002126 ORTHO05D002195 4.5e-06 57.4 151 32.5
Duzib068G0721 Durio zibethinus HOM05D002126 ORTHO05D002195 7.6e-06 56.6 119 40.3
Os05g0535900 Oryza sativa ssp. japonica HOM05D002126 ORTHO05D002195 7.6e-06 56.6 142 39.4
Zm00001eb294110 Zea mays HOM05D002126 ORTHO05D002195 7.6e-06 56.6 143 37.8
COL.COLO4_14046 Corchorus olitorius HOM05D002126 ORTHO05D002195 1.0e-05 56.2 151 36.4


User provided reference genes

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