Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 9.8e-101 370.2 191 100.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 2.5e-64 249.2 184 71.2
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.4e-64 247.7 180 71.7
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.6e-63 246.5 184 70.7
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 8.1e-63 244.2 184 69.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.8e-62 243.0 185 68.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.1e-62 242.3 180 70.6
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 6.9e-62 241.1 125 97.6
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 9.0e-62 240.7 194 67.5
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.5e-61 240.0 180 70.0
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.5e-61 240.0 180 71.1
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.6e-61 239.2 195 64.6
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.6e-61 239.2 210 61.9
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 3.4e-61 238.8 181 68.5
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.6e-61 237.7 195 64.6
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.7e-60 236.5 194 66.5
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.7e-60 236.5 181 68.5
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.2e-60 236.1 181 68.0
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.2e-60 236.1 179 69.8
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.2e-60 236.1 194 64.4
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 3.8e-60 235.3 182 68.1
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 6.4e-60 234.6 182 67.0
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.4e-59 232.6 180 66.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 4.2e-59 231.9 181 66.3
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.5e-59 231.5 181 65.7
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 7.1e-59 231.1 182 65.4
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 9.3e-59 230.7 184 64.1
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.2e-58 230.3 182 64.8
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.6e-58 229.9 181 67.4
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 2.1e-58 229.6 187 64.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 2.1e-58 229.6 180 65.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 2.1e-58 229.6 182 65.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.7e-58 229.2 181 66.3
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 3.5e-58 228.8 182 64.8
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 3.5e-58 228.8 180 66.1
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.5e-58 228.8 179 67.0
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.5e-58 228.8 179 67.0
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.6e-58 228.4 170 71.2
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 7.9e-58 227.6 180 65.6
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.0e-57 227.3 184 65.2
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.3e-57 226.9 170 70.6
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.3e-57 226.9 180 65.6
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.8e-57 226.5 183 65.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-57 226.5 179 65.9
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.0e-57 225.7 192 62.5
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 5.1e-57 224.9 182 64.8
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 5.1e-57 224.9 191 62.8
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 8.7e-57 224.2 188 62.2
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 8.7e-57 224.2 181 66.9
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.1e-56 223.8 175 65.7
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.5e-56 223.4 180 64.4
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.5e-56 223.4 187 64.2
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 1.9e-56 223.0 184 66.3
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.5e-56 222.6 184 64.1
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.5e-56 222.6 181 65.2
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 3.3e-56 222.2 229 56.3
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 3.3e-56 222.2 180 63.9
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.3e-56 221.9 181 62.4
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 5.6e-56 221.5 181 65.7
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 9.6e-56 220.7 180 63.3
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 2.8e-55 219.2 178 64.0
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.8e-55 219.2 200 62.5
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.8e-55 218.4 184 65.2
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 8.1e-55 217.6 185 62.7
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 8.1e-55 217.6 185 62.7
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 8.1e-55 217.6 185 62.7
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.1e-55 217.6 181 64.6
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.4e-54 216.9 181 64.6
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.8e-54 216.5 199 58.8
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.8e-54 216.5 187 65.2
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 1.8e-54 216.5 181 60.8
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 2.4e-54 216.1 184 60.9
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.1e-54 215.7 180 62.2
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 5.3e-54 214.9 181 60.8
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 9.0e-54 214.2 184 60.9
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 9.0e-54 214.2 180 62.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 9.0e-54 214.2 181 64.1
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.2e-53 213.8 181 64.6
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-53 213.4 173 64.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-53 213.4 173 64.7
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-53 213.4 184 62.0
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.5e-53 213.4 173 64.7
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.5e-53 213.4 180 60.0
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.0e-53 213.0 186 65.1
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 2.6e-53 212.6 167 65.9
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.6e-53 212.6 167 65.9
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 5.8e-53 211.5 176 67.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.3e-52 210.3 186 63.4
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.9e-52 209.1 184 63.0
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.5e-51 206.1 184 63.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 7.1e-51 204.5 176 64.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.9e-50 201.1 146 69.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 5.1e-49 198.4 138 71.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.1e-48 197.2 179 59.8
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.7e-48 194.9 139 69.8
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 7.4e-48 194.5 140 69.3
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 9.6e-48 194.1 140 68.6
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.6e-47 193.4 143 67.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.1e-47 193.0 143 67.8
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.8e-47 191.8 180 56.7
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.3e-47 191.4 179 59.2
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.3e-46 188.3 194 52.6
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.0e-45 186.4 184 54.9
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 4.5e-45 185.3 166 59.0
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.9e-44 182.6 226 48.7
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 3.6e-42 175.6 121 70.2
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 4.6e-42 175.3 110 75.5
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.0e-41 174.1 156 58.3
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.5e-40 170.2 116 69.8
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 4.3e-40 168.7 111 70.3
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.8e-39 166.0 113 69.0
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 7.7e-37 157.9 180 55.6
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 6.1e-34 148.3 137 56.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 8.8e-33 144.4 121 66.1
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.6e-32 142.9 136 60.3
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.3e-31 140.6 106 61.3
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 8.5e-28 127.9 176 40.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.7e-26 122.1 89 66.3
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 6.1e-26 121.7 160 43.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.3e-25 119.8 89 65.2
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.7e-24 115.2 89 62.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.8e-23 112.1 145 46.2
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 2.4e-22 109.8 91 61.5
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.1e-22 109.4 187 36.9
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 7.0e-22 108.2 113 52.2
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 2.6e-21 106.3 121 52.1
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.9e-21 105.1 99 57.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.1e-19 100.9 68 70.6
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.1e-18 96.7 114 44.7
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 5.2e-17 92.0 151 41.1
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 3.3e-16 89.4 140 40.7
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 5.7e-16 88.6 81 55.6
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-15 87.0 56 71.4
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.5e-13 79.3 78 52.6
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.7e-12 77.0 45 80.0
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.4e-06 56.6 63 54.0


User provided reference genes

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