Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 2.0e-138 495.7 250 100.0
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 6.1e-50 201.8 209 51.2
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.3e-49 199.9 242 46.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 3.3e-48 196.1 259 45.2
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 7.4e-48 194.9 246 44.3
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.6e-47 193.7 238 45.0
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.8e-47 193.0 242 44.2
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.8e-47 193.0 230 46.1
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.7e-47 192.6 255 43.1
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 4.8e-47 192.2 194 51.5
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.4e-46 190.7 241 44.8
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 5.3e-46 188.7 238 44.5
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 5.3e-46 188.7 238 43.7
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 6.9e-46 188.3 251 43.8
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 9.1e-46 188.0 238 44.1
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 9.1e-46 188.0 231 45.0
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.5e-45 187.2 189 50.3
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 2.0e-45 186.8 247 44.1
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.4e-45 186.0 240 42.1
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 3.4e-45 186.0 238 43.7
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 3.4e-45 186.0 231 44.2
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 3.4e-45 186.0 241 44.0
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 5.9e-45 185.3 241 44.0
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 1.7e-44 183.7 243 42.0
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.2e-44 183.3 231 45.0
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 3.8e-44 182.6 214 45.8
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 5.0e-44 182.2 240 44.2
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 2.5e-43 179.9 242 42.1
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 2.5e-43 179.9 238 43.7
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.2e-43 179.5 187 49.7
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 5.5e-43 178.7 240 42.9
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 5.5e-43 178.7 238 42.4
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 5.5e-43 178.7 239 42.7
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 7.2e-43 178.3 234 44.9
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.2e-42 177.6 242 42.1
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 1.2e-42 177.6 219 43.8
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 1.6e-42 177.2 240 41.2
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 2.1e-42 176.8 238 41.2
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.7e-42 176.4 242 41.3
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.6e-42 176.0 242 41.3
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 3.6e-42 176.0 242 42.6
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 4.6e-42 175.6 277 39.0
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 4.6e-42 175.6 236 41.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 4.6e-42 175.6 238 43.3
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 4.6e-42 175.6 191 47.6
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 6.1e-42 175.3 244 44.3
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 6.1e-42 175.3 238 41.2
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 6.1e-42 175.3 239 41.8
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.0e-41 174.5 245 42.9
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.3e-41 173.3 244 38.5
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 2.3e-41 173.3 231 45.0
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 2.3e-41 173.3 232 43.1
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 3.0e-41 172.9 243 42.0
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 3.0e-41 172.9 227 44.1
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 6.7e-41 171.8 242 40.5
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 6.7e-41 171.8 251 41.4
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 6.7e-41 171.8 233 42.9
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.8e-41 171.4 229 43.7
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 1.1e-40 171.0 238 42.9
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.1e-40 171.0 241 42.7
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 3.3e-40 169.5 235 42.6
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.7e-40 168.7 234 42.3
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 5.7e-40 168.7 247 41.7
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 5.7e-40 168.7 235 42.6
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 9.7e-40 167.9 248 42.7
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 1.3e-39 167.5 240 42.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.7e-39 167.2 241 42.3
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 2.8e-39 166.4 242 41.7
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 6.3e-39 165.2 242 43.4
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 1.8e-38 163.7 245 39.6
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 2.4e-38 163.3 239 40.6
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.4e-38 163.3 245 40.4
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 3.1e-38 162.9 189 49.7
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 4.1e-38 162.5 243 42.8
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 4.1e-38 162.5 243 42.8
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 5.3e-38 162.2 238 39.5
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 9.1e-38 161.4 253 39.1
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.2e-37 161.0 232 41.8
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 1.2e-37 161.0 250 39.2
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 4.5e-37 159.1 246 41.1
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 5.9e-37 158.7 243 38.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 7.7e-37 158.3 242 41.3
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.0e-36 157.9 234 40.2
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.0e-36 157.9 233 39.5
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 2.2e-36 156.8 234 39.7
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 3.8e-36 156.0 246 40.7
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 5.0e-36 155.6 246 40.7
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 5.0e-36 155.6 246 40.7
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 1.9e-35 153.7 240 40.0
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 3.2e-35 152.9 247 38.9
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 5.5e-35 152.1 235 38.7
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.6e-34 150.6 160 50.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 3.6e-34 149.4 136 54.4
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 7.9e-34 148.3 232 37.9
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 3.9e-33 146.0 148 51.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 3.9e-33 146.0 245 38.0
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 5.2e-33 145.6 176 46.6
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 6.7e-33 145.2 244 38.5
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 4.1e-30 136.0 239 38.9
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.6e-29 134.0 242 37.6
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 4.5e-29 132.5 318 30.2
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 8.0e-26 121.7 188 37.8
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.7e-23 114.0 126 48.4
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.2e-21 107.8 295 29.5
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 4.5e-21 105.9 240 34.6
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 4.5e-21 105.9 171 36.3
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 1.7e-20 104.0 239 32.2
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 7.2e-19 98.6 113 47.8
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.7e-18 95.9 241 32.4
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 4.7e-18 95.9 182 33.0
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 1.8e-17 94.0 116 43.1
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 2.0e-16 90.5 80 56.2
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 2.0e-16 90.5 160 35.6
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 7.7e-13 78.6 127 34.6
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 4.7e-10 69.3 65 49.2
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 3.7e-07 59.7 63 47.6


User provided reference genes

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