Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.6e-36 155.6 80 100.0
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.4e-34 146.7 78 94.9
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.8e-33 144.1 76 93.4
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.8e-33 144.1 76 93.4
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.4e-32 141.7 78 89.7
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.1e-32 141.4 76 90.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.1e-32 141.4 78 89.7
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.1e-32 141.0 78 91.0
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 4.1e-32 141.0 78 88.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.3e-32 140.6 76 92.1
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 5.3e-32 140.6 78 89.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 5.3e-32 140.6 76 88.2
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.3e-32 140.6 78 89.7
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.3e-32 140.6 78 89.7
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 6.9e-32 140.2 76 90.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 9.0e-32 139.8 78 89.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 9.0e-32 139.8 76 92.1
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-31 139.4 78 88.5
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.2e-31 139.4 78 88.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.5e-31 139.0 76 88.2
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-31 138.7 78 88.5
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.0e-31 138.7 78 87.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.6e-31 138.3 78 87.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.6e-31 138.3 75 92.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-31 138.3 78 88.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-31 138.3 78 87.2
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.6e-31 138.3 76 88.2
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.4e-31 137.9 76 88.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 3.4e-31 137.9 76 88.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.4e-31 137.9 75 89.3
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.4e-31 137.9 76 88.2
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.4e-31 137.9 78 88.5
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 4.5e-31 137.5 78 88.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.5e-31 137.5 76 88.2
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 5.9e-31 137.1 76 89.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 7.7e-31 136.7 78 85.9
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.0e-30 136.3 78 87.2
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.0e-30 136.3 76 89.5
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.3e-30 136.0 76 88.2
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.3e-30 136.0 78 85.9
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.3e-30 136.0 78 87.2
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.3e-30 136.0 76 86.8
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.3e-30 136.0 76 88.2
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.7e-30 135.6 76 86.8
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.7e-30 135.6 78 85.9
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.7e-30 135.6 76 86.8
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.2e-30 135.2 76 86.8
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.2e-30 135.2 76 86.8
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 2.2e-30 135.2 78 85.9
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.2e-30 135.2 78 87.2
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.9e-30 134.8 76 86.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.9e-30 134.8 76 86.8
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.9e-30 134.8 76 85.5
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.8e-30 134.4 75 89.3
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 3.8e-30 134.4 76 85.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 3.8e-30 134.4 76 86.8
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.8e-30 134.4 76 86.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.8e-30 134.4 77 87.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.0e-30 134.0 75 88.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.0e-30 134.0 76 85.5
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.5e-30 133.7 76 85.5
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.5e-30 133.7 76 85.5
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 6.5e-30 133.7 75 86.7
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 8.5e-30 133.3 78 83.3
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 8.5e-30 133.3 76 84.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 8.5e-30 133.3 78 84.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-29 132.9 76 84.2
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-29 132.9 76 84.2
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.1e-29 132.9 76 84.2
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.1e-29 132.9 78 83.3
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.1e-29 132.9 78 83.3
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.1e-29 132.9 76 84.2
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.1e-29 132.9 78 83.3
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.1e-29 132.9 78 83.3
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.1e-29 132.9 76 84.2
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.4e-29 132.5 78 83.3
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.4e-29 132.5 78 83.3
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.4e-29 132.5 78 83.3
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.4e-29 132.5 78 83.3
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.4e-29 132.5 76 82.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.4e-29 132.5 76 84.2
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.4e-29 132.5 75 86.7
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.4e-29 132.5 76 84.2
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 1.9e-29 132.1 78 83.3
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.9e-29 132.1 78 83.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.9e-29 132.1 78 83.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.9e-29 132.1 77 84.4
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-29 131.7 78 83.3
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-29 131.7 78 83.3
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-29 131.7 78 83.3
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 3.2e-29 131.3 76 85.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 3.2e-29 131.3 76 85.5
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 3.2e-29 131.3 78 83.3
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 4.2e-29 131.0 76 81.6
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 4.2e-29 131.0 76 82.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.5e-29 130.6 78 82.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.5e-29 130.6 76 82.9
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.5e-29 130.6 76 82.9
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 7.2e-29 130.2 76 82.9
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 9.4e-29 129.8 75 84.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 9.4e-29 129.8 75 84.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 9.4e-29 129.8 76 82.9
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 9.4e-29 129.8 78 80.8
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 9.4e-29 129.8 76 82.9
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 9.4e-29 129.8 75 82.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-28 129.4 76 81.6
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.2e-28 129.4 76 81.6
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.2e-28 129.4 76 81.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.1e-28 128.6 76 81.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.1e-28 128.6 76 82.9
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.7e-28 128.3 75 84.0
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.7e-28 128.3 78 80.8
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-27 125.9 73 82.2
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.0e-27 124.8 77 81.8
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 3.9e-27 124.4 70 84.3
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.1e-27 124.0 78 80.8
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 8.8e-27 123.2 67 91.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.1e-26 122.9 75 77.3
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 2.0e-26 122.1 76 76.3
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 2.5e-26 121.7 76 75.0
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 9.7e-26 119.8 76 73.7
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 1.3e-25 119.4 71 80.3
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 2.2e-25 118.6 71 80.3
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.8e-25 118.2 76 73.7
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.1e-24 114.8 74 77.0
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.1e-24 114.8 74 77.0
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 5.9e-23 110.5 71 78.9
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 8.5e-22 106.7 79 62.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.1e-21 106.3 105 56.2
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.5e-21 105.1 56 91.1
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 3.2e-21 104.8 70 64.3
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.4e-19 99.4 57 82.5
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 2.3e-19 98.6 56 83.9
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 2.0e-18 95.5 51 92.2
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 3.1e-16 88.2 55 78.2
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 7.0e-16 87.0 50 80.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.6e-15 85.1 84 47.6
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 1.6e-12 75.9 45 80.0
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.6e-12 74.7 68 50.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 2.0e-10 68.9 75 56.0
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 9.7e-10 66.6 42 71.4
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.8e-09 64.3 74 43.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 8.5e-06 53.5 29 86.2


User provided reference genes

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