Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.6e-146 521.5 263 100.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 6.3e-114 414.5 261 85.1
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 3.1e-36 156.4 170 49.4
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.4e-35 152.5 180 48.3
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.8e-35 152.1 180 48.3
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.3e-31 140.2 187 41.2
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.0e-31 139.8 181 42.5
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.9e-31 139.4 176 43.8
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-30 137.9 183 41.0
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.8e-29 133.3 163 46.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.6e-29 132.9 181 40.9
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.6e-29 132.9 192 42.7
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 3.6e-29 132.9 159 42.8
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.1e-28 131.3 159 42.8
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.8e-28 130.6 181 44.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.8e-28 130.6 183 43.2
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 4.4e-27 125.9 156 42.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 7.6e-27 125.2 191 39.8
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.8e-26 122.9 164 43.9
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.8e-26 122.9 180 41.1
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.4e-25 120.9 155 43.2
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.9e-25 120.6 271 31.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.4e-25 120.2 189 37.0
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 7.1e-25 118.6 167 38.9
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.6e-24 117.5 175 38.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.7e-24 116.7 162 42.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.7e-24 116.7 162 42.0
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.6e-24 115.9 171 38.6
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 6.0e-24 115.5 178 38.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.7e-23 114.0 196 37.2
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.7e-23 114.0 181 38.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.3e-23 113.6 170 39.4
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 3.0e-23 113.2 162 40.1
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 3.0e-23 113.2 162 40.1
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.1e-23 112.5 170 41.2
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 6.6e-23 112.1 190 37.9
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.6e-23 112.1 172 39.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 6.6e-23 112.1 169 39.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.9e-22 110.5 167 37.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.5e-22 110.2 163 38.7
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.5e-22 110.2 167 40.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.5e-22 110.2 160 36.9
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.5e-22 110.2 161 41.6
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.3e-22 109.8 189 36.0
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.3e-22 109.8 165 36.4
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.3e-22 109.8 179 35.8
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.3e-22 109.8 209 32.1
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.3e-22 109.4 154 39.6
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.3e-22 109.4 155 38.7
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 7.3e-22 108.6 222 33.3
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 7.3e-22 108.6 159 41.5
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.3e-22 108.6 168 39.9
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 9.6e-22 108.2 175 37.7
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.3e-21 107.8 174 36.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.6e-21 107.5 159 40.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-21 107.5 159 40.9
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.6e-21 107.5 162 39.5
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 2.1e-21 107.1 161 41.6
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.1e-21 107.1 188 34.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.8e-21 106.7 176 35.8
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.8e-21 106.7 172 33.7
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 3.6e-21 106.3 166 37.3
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 3.6e-21 106.3 166 37.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 3.6e-21 106.3 166 37.3
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 3.6e-21 106.3 166 37.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.6e-21 106.3 164 40.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.6e-21 106.3 154 39.0
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 4.8e-21 105.9 175 34.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.8e-21 105.9 175 34.3
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 6.2e-21 105.5 193 34.2
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 8.1e-21 105.1 154 38.3
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 8.1e-21 105.1 178 34.8
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 8.1e-21 105.1 170 35.9
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.1e-20 104.8 166 38.0
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-20 104.4 167 40.1
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.4e-20 104.4 167 40.1
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 2.4e-20 103.6 167 36.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.4e-20 103.6 160 34.4
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.4e-20 103.6 168 38.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 3.1e-20 103.2 185 35.1
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.1e-20 103.2 178 34.8
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 3.1e-20 103.2 150 38.0
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.0e-20 102.8 165 36.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 4.0e-20 102.8 163 36.8
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 5.3e-20 102.4 170 35.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 5.3e-20 102.4 181 33.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 6.9e-20 102.1 187 37.4
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.9e-20 102.1 180 37.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 6.9e-20 102.1 159 39.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.0e-20 101.7 179 34.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 9.0e-20 101.7 153 37.9
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 9.0e-20 101.7 188 33.5
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 1.2e-19 101.3 179 34.6
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.5e-19 100.9 178 34.3
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-19 100.5 161 38.5
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 2.0e-19 100.5 161 38.5
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.0e-19 100.5 167 35.3
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.6e-19 100.1 179 35.2
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.4e-19 99.8 170 35.9
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 3.4e-19 99.8 152 37.5
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.5e-19 99.4 178 34.8
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 4.5e-19 99.4 150 39.3
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 4.5e-19 99.4 169 36.1
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 5.8e-19 99.0 149 38.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 7.6e-19 98.6 159 38.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 9.9e-19 98.2 173 35.3
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.3e-18 97.8 153 34.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.3e-18 97.8 168 34.5
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.7e-18 97.4 172 34.9
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.7e-18 97.4 165 35.8
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 2.2e-18 97.1 157 35.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.9e-18 96.7 164 35.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.8e-18 96.3 155 34.2
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.9e-18 95.9 178 33.1
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 4.9e-18 95.9 168 35.1
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 4.9e-18 95.9 158 34.2
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 4.9e-18 95.9 178 32.6
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 6.4e-18 95.5 160 35.6
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.1e-17 94.7 175 30.9
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 2.4e-17 93.6 161 34.2
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 2.4e-17 93.6 188 33.0
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 3.2e-17 93.2 201 32.8
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.2e-17 93.2 182 32.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.2e-17 93.2 154 39.6
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 4.2e-17 92.8 165 32.1
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 4.2e-17 92.8 171 33.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 7.1e-17 92.0 178 35.4
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.1e-17 92.0 169 33.7
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.2e-16 91.3 228 30.7
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.2e-16 91.3 180 33.9
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.6e-16 90.9 169 31.4
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.6e-16 90.9 165 36.4
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.5e-16 89.7 168 36.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 3.5e-16 89.7 166 35.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.6e-16 89.4 184 33.7
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 6.0e-16 89.0 228 31.1
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 7.9e-16 88.6 163 33.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-15 87.8 184 33.2
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 2.3e-15 87.0 170 38.2
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.0e-15 86.7 184 33.2
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 5.1e-15 85.9 174 31.6
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 6.7e-15 85.5 146 36.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 8.7e-15 85.1 176 30.1
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 4.3e-14 82.8 200 29.0
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.6e-14 82.4 197 28.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.8e-13 80.1 146 33.6
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.4e-12 77.8 152 32.2
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 4.0e-12 76.3 151 32.5
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.2e-11 74.7 153 31.4
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-11 73.6 162 30.2
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 2.6e-11 73.6 165 31.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.8e-11 72.4 131 30.5
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.9e-11 71.6 132 32.6
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 9.9e-11 71.6 145 29.7
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.3e-10 71.2 167 28.7
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.3e-10 71.2 158 32.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 4.9e-10 69.3 139 31.7
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 4.9e-10 69.3 117 36.8
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.7e-08 63.5 137 32.1
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.3e-07 60.5 99 36.4
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.0e-07 60.1 105 33.3
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.1e-07 59.3 77 44.2


User provided reference genes

Program Settings