Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 4.1e-108 394.8 208 100.0
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 9.4e-73 277.3 207 72.9
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 8.0e-72 274.2 207 73.9
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.0e-71 273.9 209 74.2
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.3e-71 272.7 204 73.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 4.0e-71 271.9 207 70.5
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 8.8e-71 270.8 205 73.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 1.5e-70 270.0 222 67.6
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.3e-69 264.6 207 71.5
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 2.4e-68 262.7 207 69.6
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.4e-68 262.7 215 70.2
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 7.0e-68 261.2 207 70.0
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 7.0e-68 261.2 216 71.3
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 7.0e-68 261.2 207 69.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 9.1e-68 260.8 207 70.5
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 9.1e-68 260.8 211 70.1
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 2.7e-67 259.2 208 70.2
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 3.5e-67 258.8 234 64.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 7.7e-67 257.7 208 69.2
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.3e-66 256.9 208 69.7
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 8.6e-66 254.2 228 64.5
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.9e-65 253.1 207 69.6
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 2.5e-65 252.7 210 69.0
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 4.2e-65 251.9 219 68.5
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 7.2e-65 251.1 222 68.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 9.5e-65 250.8 221 68.8
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 8.0e-64 247.7 220 65.9
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.8e-63 246.5 222 66.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 2.3e-63 246.1 223 65.0
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.3e-63 246.1 208 67.8
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.0e-63 245.7 222 63.1
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.0e-63 245.4 214 65.4
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.2e-63 245.0 213 68.5
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 6.8e-63 244.6 250 60.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.9e-63 244.2 241 61.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 2.0e-62 243.0 216 64.8
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.6e-62 242.7 254 58.7
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.6e-62 242.7 207 68.6
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 5.7e-62 241.5 218 64.7
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 7.5e-62 241.1 212 66.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 9.8e-62 240.7 211 69.2
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.7e-61 240.0 207 68.1
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.7e-61 240.0 222 64.0
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.2e-61 239.6 263 56.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.8e-61 239.2 213 66.7
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 6.3e-61 238.0 218 64.7
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.4e-60 236.9 228 63.2
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.1e-60 235.7 216 62.0
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 9.2e-60 234.2 208 63.9
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.6e-59 233.4 221 63.3
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.3e-58 230.3 209 61.7
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.7e-58 229.9 209 61.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 5.0e-58 228.4 258 55.0
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.5e-57 226.9 211 62.1
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.5e-57 226.9 211 62.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.5e-54 216.9 207 61.8
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 2.6e-54 216.1 209 61.2
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.7e-53 213.4 207 60.4
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 1.7e-53 213.4 207 60.9
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 2.9e-53 212.6 218 58.3
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.4e-52 209.5 211 59.7
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.1e-52 208.8 211 59.7
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 5.0e-50 201.8 173 67.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 8.6e-50 201.1 221 57.0
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.1e-49 200.7 179 66.5
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.5e-49 200.3 154 68.8
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 2.3e-47 193.0 217 55.3
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.2e-47 191.8 170 64.7
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 9.8e-46 187.6 168 64.9
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 3.7e-45 185.7 95 96.8
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 4.9e-45 185.3 95 96.8
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.4e-45 184.9 170 67.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 6.4e-45 184.9 215 52.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-44 184.1 95 95.8
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-44 183.7 172 62.2
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.4e-44 183.0 95 95.8
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 2.4e-44 183.0 167 65.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 7.0e-44 181.4 180 62.8
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 9.2e-44 181.0 94 95.7
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.1e-43 179.9 99 91.9
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 2.7e-43 179.5 121 80.2
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 3.5e-43 179.1 212 54.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-42 177.2 97 91.8
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.7e-42 176.8 96 93.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.7e-42 176.8 114 79.8
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 3.9e-42 175.6 95 92.6
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.5e-41 173.7 168 63.1
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.2e-40 170.6 164 62.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.6e-40 170.2 221 50.7
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 2.1e-40 169.9 191 58.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 5.2e-39 165.2 167 60.5
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.2e-38 164.1 95 87.4
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.2e-38 164.1 95 87.4
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.2e-38 164.1 101 90.1
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.2e-36 156.0 226 46.5
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 3.9e-34 149.1 129 62.8
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.5e-33 146.4 180 55.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 9.5e-33 144.4 265 42.3
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 3.6e-32 142.5 208 46.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 8.1e-32 141.4 271 41.7
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.1e-31 141.0 289 39.1
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.4e-31 139.8 245 43.3
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 9.9e-30 134.4 109 71.6
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.9e-28 130.2 212 43.4
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 4.2e-28 129.0 107 69.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.7e-26 123.6 316 35.8
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 9.6e-25 117.9 210 40.5
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.2e-24 117.5 145 55.9
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 4.7e-24 115.5 63 88.9
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.6e-22 109.8 179 42.5
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.1e-20 104.4 55 94.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 3.2e-20 102.8 172 42.4
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 3.9e-18 95.9 279 34.1
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 6.6e-18 95.1 157 44.6
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.9e-17 93.6 117 48.7
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.3e-17 92.8 138 46.4
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 7.3e-17 91.7 116 50.9
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 4.8e-16 89.0 163 42.9
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 6.9e-15 85.1 167 39.5
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 6.9e-15 85.1 167 39.5
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 7.6e-14 81.6 40 95.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.2e-12 76.3 50 72.0
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 3.2e-12 76.3 125 44.0
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 7.9e-11 71.6 114 39.5
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.8e-10 70.5 128 45.3
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 2.3e-10 70.1 45 82.2
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.5e-09 66.6 41 80.5
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.1e-07 61.2 35 88.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 1.4e-07 60.8 40 75.0


User provided reference genes

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