Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 4.5e-68 261.5 175 100.0
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.6e-23 112.8 84 65.5
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 4.4e-23 112.1 84 61.9
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 5.8e-23 111.7 82 63.4
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 7.5e-23 111.3 82 63.4
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.7e-22 110.2 82 63.4
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.7e-22 110.2 82 63.4
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.7e-22 110.2 84 60.7
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.9e-22 109.4 85 61.2
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.9e-22 109.4 82 61.0
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.9e-22 109.4 82 61.0
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.9e-22 109.4 82 61.0
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 6.4e-22 108.2 82 61.0
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 6.4e-22 108.2 82 61.0
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 6.4e-22 108.2 82 61.0
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 6.4e-22 108.2 82 61.0
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 6.4e-22 108.2 82 59.8
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 8.3e-22 107.8 82 59.8
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 8.3e-22 107.8 82 59.8
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 8.3e-22 107.8 82 62.2
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.1e-21 107.5 84 63.1
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.1e-21 107.5 82 63.4
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.1e-21 107.5 82 57.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.1e-21 107.5 84 58.3
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.4e-21 107.1 82 58.5
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.4e-21 107.1 82 62.2
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.9e-21 106.7 85 63.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.9e-21 106.7 84 57.1
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 3.2e-21 105.9 84 60.7
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 3.2e-21 105.9 84 60.7
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 4.1e-21 105.5 84 59.5
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 4.1e-21 105.5 84 59.5
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 4.1e-21 105.5 84 59.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 4.1e-21 105.5 84 60.7
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 4.1e-21 105.5 84 60.7
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 5.4e-21 105.1 82 61.0
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.4e-21 105.1 82 62.2
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 5.4e-21 105.1 82 59.8
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 5.4e-21 105.1 84 60.7
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 7.1e-21 104.8 84 58.3
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 7.1e-21 104.8 84 59.5
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 7.1e-21 104.8 84 60.7
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 9.2e-21 104.4 84 60.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 9.2e-21 104.4 83 63.9
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.2e-20 104.0 82 61.0
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.2e-20 104.0 82 59.8
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 81 61.7
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 82 58.5
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.2e-20 104.0 84 58.3
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-20 104.0 83 63.9
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.2e-20 104.0 82 58.5
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.2e-20 104.0 83 60.2
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.2e-20 104.0 82 59.8
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.6e-20 103.6 84 59.5
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.6e-20 103.6 84 59.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.6e-20 103.6 82 57.3
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.6e-20 103.6 82 58.5
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.6e-20 103.6 82 58.5
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.6e-20 103.6 82 58.5
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 2.1e-20 103.2 84 59.5
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.1e-20 103.2 82 59.8
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.1e-20 103.2 84 56.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.7e-20 102.8 84 57.1
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 3.5e-20 102.4 84 57.1
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 3.5e-20 102.4 89 57.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 3.5e-20 102.4 82 59.8
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 4.6e-20 102.1 84 56.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 6.0e-20 101.7 84 56.0
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 6.0e-20 101.7 82 54.9
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 7.8e-20 101.3 82 58.5
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 7.8e-20 101.3 84 53.6
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 7.8e-20 101.3 85 54.1
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 7.8e-20 101.3 84 57.1
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.0e-19 100.9 79 60.8
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.3e-19 100.5 86 54.7
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.3e-19 100.5 84 56.0
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.3e-19 100.5 82 58.5
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.3e-19 100.5 84 54.8
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.7e-19 100.1 82 57.3
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 1.7e-19 100.1 84 58.3
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.7e-19 100.1 81 54.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.7e-19 100.1 82 54.9
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.3e-19 99.8 82 57.3
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 2.3e-19 99.8 82 57.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.3e-19 99.8 86 54.7
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 2.3e-19 99.8 86 54.7
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.3e-19 99.8 82 57.3
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.3e-19 99.8 82 57.3
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 3.0e-19 99.4 82 56.1
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 3.0e-19 99.4 81 58.0
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 3.0e-19 99.4 83 57.8
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.9e-19 99.0 83 55.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 3.9e-19 99.0 82 57.3
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 3.9e-19 99.0 82 57.3
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 5.1e-19 98.6 84 56.0
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 5.1e-19 98.6 83 60.2
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 5.1e-19 98.6 85 58.8
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 6.6e-19 98.2 83 57.8
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.6e-19 97.8 85 58.8
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.1e-18 97.4 84 54.8
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 1.5e-18 97.1 82 52.4
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.5e-18 97.1 84 54.8
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.9e-18 96.7 84 56.0
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-18 96.7 82 53.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 4.3e-18 95.5 82 54.9
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 5.6e-18 95.1 82 52.4
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 7.3e-18 94.7 79 58.2
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 7.3e-18 94.7 84 54.8
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 7.3e-18 94.7 77 59.7
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 7.3e-18 94.7 82 52.4
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 9.5e-18 94.4 82 53.7
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.2e-17 94.0 83 54.2
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.6e-17 93.6 82 52.4
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 1.6e-17 93.6 82 53.7
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.6e-17 93.6 82 53.7
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.1e-17 93.2 84 53.6
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.8e-17 92.8 82 54.9
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.8e-17 92.8 82 54.9
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.6e-17 92.4 80 53.8
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 6.2e-17 91.7 82 53.7
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.1e-16 90.9 82 51.2
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.8e-16 90.1 84 51.2
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 5.2e-16 88.6 83 49.4
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.5e-15 87.0 81 51.9
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 2.0e-15 86.7 83 50.6
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.6e-15 86.3 64 57.8
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 9.9e-15 84.3 76 52.6
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.7e-14 83.6 83 48.2
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.9e-14 82.8 83 49.4
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.9e-14 82.8 82 46.3
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.9e-14 82.8 73 54.8
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.9e-14 82.0 71 54.9
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.9e-14 82.0 71 54.9
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.9e-13 80.1 82 46.3
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 5.4e-13 78.6 53 62.3
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.7e-12 76.3 80 47.5
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.0e-11 74.3 81 43.2
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.0e-11 74.3 81 43.2
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.3e-11 73.2 56 55.4
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 8.6e-11 71.2 55 54.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 3.3e-10 69.3 80 43.8
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 3.3e-10 69.3 80 43.8
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 3.6e-09 65.9 80 48.8
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.9e-06 56.2 85 37.6
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.4e-06 54.7 41 58.5


User provided reference genes

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