Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 0.0e+00 1250.3 656 100.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.4e-114 416.0 655 43.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.4e-109 401.4 672 43.2
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 9.2e-98 362.1 701 39.2
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 6.0e-97 359.4 669 39.5
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 3.0e-96 357.1 677 39.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 3.9e-96 356.7 664 38.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.3e-95 352.4 681 40.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 7.3e-95 352.4 713 38.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.6e-92 344.0 679 39.9
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.4e-92 343.6 688 38.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.5e-92 342.4 665 38.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.7e-91 340.1 673 37.6
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.6e-89 334.7 740 38.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.3e-88 331.6 662 38.1
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 8.6e-88 328.9 691 36.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.1e-87 328.6 658 37.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.9e-87 327.8 687 38.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.2e-86 325.1 671 36.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.2e-86 325.1 713 35.5
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.1e-86 324.3 755 35.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.6e-86 323.6 661 36.8
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 6.2e-86 322.8 653 39.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-85 322.0 742 34.8
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.4e-85 321.6 697 35.9
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 3.1e-85 320.5 704 35.4
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.2e-85 319.7 698 36.2
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 2.6e-84 317.4 679 38.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.4e-84 317.0 677 35.7
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 7.6e-84 315.8 657 36.4
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 9.9e-84 315.5 666 36.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.7e-83 314.7 691 34.3
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.2e-83 314.3 694 34.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.9e-83 313.2 665 36.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-82 312.0 709 34.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.1e-82 310.1 692 35.7
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.4e-82 309.7 617 38.7
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 3.5e-81 307.0 697 35.3
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.0e-80 305.4 717 35.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.3e-80 304.3 686 36.0
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 6.6e-80 302.8 715 35.1
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-79 302.0 688 35.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.9e-79 301.2 687 33.2
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 4.3e-79 300.1 680 36.6
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.6e-79 299.7 709 34.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 5.6e-79 299.7 676 35.8
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.3e-79 299.3 621 35.7
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.2e-78 298.5 687 35.8
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.6e-78 297.0 704 33.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 8.1e-78 295.8 712 35.3
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-77 295.4 717 33.9
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.2e-77 293.1 684 36.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 6.8e-77 292.7 717 32.9
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.9e-77 292.4 731 34.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-76 292.0 715 33.6
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.5e-76 291.6 680 37.5
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.6e-76 290.8 726 35.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 3.4e-76 290.4 671 37.9
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.4e-76 290.4 710 34.5
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 3.4e-76 290.4 731 35.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.4e-76 290.4 705 34.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.8e-76 289.7 769 33.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.7e-75 288.1 675 34.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.9e-75 287.3 675 38.2
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.9e-75 287.3 655 34.4
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.1e-74 285.4 679 38.1
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.4e-74 284.3 675 37.2
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 5.4e-74 283.1 710 35.2
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.3e-74 282.3 680 37.2
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.6e-73 281.6 675 36.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.9e-72 276.9 829 31.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.5e-71 274.2 671 37.3
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.3e-71 273.9 717 33.1
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 4.3e-71 273.5 673 35.7
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.1e-70 269.2 695 32.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.1e-69 268.9 693 35.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.8e-69 268.1 679 32.8
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.3e-69 266.5 674 34.6
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 6.9e-69 266.2 678 36.0
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 9.0e-69 265.8 669 36.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 2.0e-68 264.6 707 35.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-67 261.9 679 34.3
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.8e-67 260.4 687 33.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.8e-67 260.4 772 31.9
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.4e-66 256.5 660 31.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 9.3e-66 255.8 742 33.6
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.3e-64 251.1 722 33.8
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.9e-64 250.4 674 33.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.1e-64 250.0 783 29.6
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.1e-64 250.0 707 32.5
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 9.6e-63 245.7 747 32.9
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 1.6e-62 245.0 676 32.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.1e-61 242.3 653 33.7
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 4.0e-61 240.4 752 31.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 9.0e-61 239.2 713 31.6
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.2e-60 238.8 580 33.8
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 2.6e-60 237.7 711 30.5
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 9.9e-60 235.7 401 41.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 8.4e-59 232.6 696 33.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 8.4e-59 232.6 385 42.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.8e-56 224.9 665 31.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.5e-55 221.9 774 27.9
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.8e-54 217.6 824 30.2
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 6.2e-54 216.5 699 29.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.1e-53 215.7 774 30.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-51 208.8 651 29.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.6e-49 201.8 623 30.5
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.0e-48 199.1 847 28.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.8e-48 198.4 578 35.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 8.7e-48 196.1 627 31.1
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.5e-47 195.3 662 29.0
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.5e-47 194.5 877 25.9
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 3.3e-47 194.1 651 31.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 7.4e-47 193.0 912 25.8
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.8e-46 191.0 880 25.7
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.8e-45 188.3 440 34.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 6.5e-43 179.9 636 30.7
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.3e-40 172.2 658 28.6
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.3e-40 172.2 545 29.0
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 5.1e-40 170.2 923 25.6
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 4.8e-38 163.7 668 26.6
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.7e-35 155.2 703 26.7
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.9e-35 154.5 622 29.9
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.0e-32 144.4 253 39.1
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.7e-30 138.7 340 33.2
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 5.3e-29 133.7 227 37.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-28 132.5 436 31.0
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.5e-28 132.1 489 28.4
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-26 125.9 164 46.3
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.7e-25 120.6 411 29.9
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 7.9e-25 119.8 395 28.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 8.8e-24 116.3 170 45.3
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 7.4e-23 113.2 317 31.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 9.7e-23 112.8 318 32.4
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.8e-22 111.3 362 29.0
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.8e-22 111.3 318 31.8
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.8e-21 108.6 360 34.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 7.0e-21 106.7 390 28.7
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 9.1e-21 106.3 157 43.3
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.2e-20 105.9 360 34.2
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.3e-19 102.4 113 51.3
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.2e-19 101.7 477 26.8
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.0e-19 100.5 139 43.2
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 8.5e-19 99.8 378 30.4
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.5e-19 99.8 167 41.3
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.5e-18 99.0 361 34.3
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.2e-17 95.9 83 50.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.6e-17 94.4 154 40.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.7e-16 90.1 111 45.9
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.5e-15 89.0 111 45.9
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 7.5e-15 86.7 552 24.6
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.7e-15 86.3 142 38.0
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 3.7e-14 84.3 341 33.1
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.7e-12 78.2 181 35.9
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 4.5e-12 77.4 378 27.8
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.0e-11 76.3 684 22.8
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.0e-11 76.3 86 48.8
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.5e-11 73.6 100 46.0
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 7.2e-10 70.1 307 28.3
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 7.2e-10 70.1 61 52.5
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.0e-08 66.2 80 45.0
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.0e-08 64.7 61 52.5
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 2.6e-07 61.6 104 38.5
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 7.5e-07 60.1 78 43.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 4.8e-06 57.4 97 42.3


User provided reference genes

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