Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.6e-130 469.5 259 100.0
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.3e-60 236.5 265 54.7
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 6.7e-60 235.0 263 51.3
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 8.7e-60 234.6 257 55.3
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.9e-59 233.4 244 54.5
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 4.3e-59 232.3 247 54.7
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 5.7e-59 231.9 243 57.2
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.3e-58 230.7 240 57.9
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.3e-58 230.7 251 55.8
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 1.6e-58 230.3 254 57.9
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 2.2e-58 229.9 264 57.2
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 2.8e-58 229.6 257 55.6
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.8e-58 228.8 254 54.7
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 6.3e-58 228.4 271 50.6
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 6.3e-58 228.4 257 55.6
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.1e-57 226.1 256 58.6
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 5.3e-57 225.3 253 55.7
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 9.0e-57 224.6 242 54.5
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.2e-56 224.2 253 50.6
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 4.5e-56 222.2 265 50.6
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 5.9e-56 221.9 260 49.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.3e-55 220.7 251 50.6
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 2.2e-55 219.9 257 56.8
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.9e-55 219.5 245 59.6
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.1e-54 217.6 243 52.3
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.1e-54 217.6 270 50.7
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 1.1e-54 217.6 256 52.0
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.4e-54 217.2 271 51.7
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.5e-54 216.5 240 59.2
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 2.5e-54 216.5 281 53.0
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.2e-54 216.1 240 59.2
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 5.5e-54 215.3 245 54.7
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 5.5e-54 215.3 252 51.2
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 7.2e-54 214.9 275 55.6
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 7.2e-54 214.9 261 52.5
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 9.4e-54 214.5 253 47.8
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 9.4e-54 214.5 249 55.0
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.2e-53 214.2 257 54.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.2e-53 214.2 259 55.2
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.6e-53 212.6 266 53.0
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 3.6e-53 212.6 236 57.2
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 4.6e-53 212.2 249 52.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 6.1e-53 211.8 259 54.4
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 7.9e-53 211.5 278 48.9
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.0e-52 211.1 240 59.2
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.0e-52 211.1 260 53.5
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.4e-52 210.7 256 55.5
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.0e-52 209.5 248 53.2
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 3.9e-52 209.1 259 53.3
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 5.1e-52 208.8 273 53.5
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 6.7e-52 208.4 241 56.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 6.7e-52 208.4 278 52.9
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 8.8e-52 208.0 250 55.6
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 8.8e-52 208.0 266 53.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.5e-51 207.2 262 47.3
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 1.5e-51 207.2 275 49.5
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.0e-51 206.8 230 50.0
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 2.5e-51 206.5 241 57.3
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 4.3e-51 205.7 244 54.5
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.7e-50 203.8 267 49.1
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 2.8e-50 203.0 212 53.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.7e-50 202.6 262 52.7
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 3.7e-50 202.6 259 47.1
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 4.8e-50 202.2 255 53.3
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 6.3e-50 201.8 278 45.7
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 8.2e-50 201.4 226 52.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.4e-49 200.7 230 53.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 2.4e-49 199.9 250 55.2
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 3.1e-49 199.5 230 54.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 4.1e-49 199.1 216 56.5
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 6.9e-49 198.4 221 56.6
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 6.9e-49 198.4 261 48.3
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.2e-48 197.6 264 48.5
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 2.0e-48 196.8 216 56.0
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.4e-48 196.1 220 48.2
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 7.7e-48 194.9 220 55.9
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.7e-48 194.9 225 53.8
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.0e-47 194.5 251 52.6
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.3e-47 194.1 225 56.0
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.9e-47 193.0 208 56.7
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 6.5e-47 191.8 252 47.6
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 8.5e-47 191.4 240 53.8
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 8.5e-47 191.4 228 54.4
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.5e-47 191.4 231 54.1
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 8.5e-47 191.4 274 49.3
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-46 191.0 230 54.8
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-46 191.0 220 53.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.4e-46 190.7 294 45.9
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.5e-46 189.9 213 56.3
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.2e-46 189.5 231 54.1
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 4.2e-46 189.1 300 47.3
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 5.5e-46 188.7 217 54.4
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 7.2e-46 188.3 218 54.1
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 7.2e-46 188.3 246 49.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 6.1e-45 185.3 230 53.9
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 6.1e-45 185.3 224 52.2
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 1.0e-44 184.5 214 55.1
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.0e-44 184.5 215 53.0
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 1.4e-44 184.1 255 50.6
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.0e-44 183.0 282 47.5
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.3e-43 179.5 245 43.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 1.3e-42 177.6 247 51.8
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 8.2e-42 174.9 250 45.2
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.8e-41 173.7 235 47.2
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 4.1e-41 172.6 117 69.2
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 5.3e-41 172.2 218 56.4
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.0e-40 170.2 232 47.0
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.0e-40 170.2 222 52.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 3.5e-40 169.5 190 48.9
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 4.5e-40 169.1 241 44.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 4.5e-40 169.1 233 42.9
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.2e-39 166.8 236 45.8
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.9e-39 166.4 243 45.3
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 6.5e-39 165.2 232 45.7
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 6.5e-39 165.2 113 67.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.1e-38 164.5 110 70.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.4e-38 164.1 273 42.1
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 1.4e-38 164.1 198 47.5
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.9e-38 163.7 233 45.1
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.9e-38 163.7 235 45.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 3.6e-37 159.5 228 44.3
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 6.1e-37 158.7 230 45.2
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.4e-36 157.5 226 44.7
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.4e-35 152.5 111 65.8
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.7e-34 150.6 261 40.6
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-32 144.1 238 47.1
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.0e-31 141.4 105 61.9
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.9e-31 139.8 238 40.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 6.5e-31 138.7 155 47.1
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 2.5e-30 136.7 111 57.7
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 3.2e-30 136.3 111 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 7.2e-30 135.2 263 37.6
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-29 133.7 111 55.9
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 4.7e-29 132.5 152 46.7
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 8.8e-28 128.3 155 44.5
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-27 127.5 155 45.8
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.1e-25 121.3 279 36.6
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.4e-25 120.2 103 55.3
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 9.1e-25 118.2 100 57.0
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-24 117.5 152 43.4
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.6e-24 117.5 144 45.1
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 2.0e-24 117.1 86 61.6
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 2.7e-24 116.7 103 53.4
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 3.5e-24 116.3 244 34.8
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 1.9e-22 110.5 265 37.4
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 2.5e-22 110.2 257 37.0
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 3.2e-22 109.8 156 37.2
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-21 107.1 86 58.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.7e-18 97.4 69 66.7
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.3e-18 95.5 80 61.2
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 7.2e-14 82.0 161 38.5
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.8e-12 77.4 112 42.0
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.8e-09 67.4 106 40.6
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.0e-08 63.9 93 44.1


User provided reference genes

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