Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 5.6e-221 770.8 427 100.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.8e-110 403.7 387 62.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 4.1e-107 392.5 431 59.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.9e-105 386.0 395 60.0
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.1e-104 384.4 398 59.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 5.6e-104 382.1 396 59.3
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 9.5e-104 381.3 396 57.3
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 9.5e-104 381.3 409 60.1
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.1e-103 380.2 428 56.5
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.8e-103 379.8 433 56.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.8e-103 379.8 399 59.1
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.8e-102 377.1 395 60.8
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.8e-102 377.1 399 58.9
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.3e-102 376.7 394 59.6
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.2e-101 374.4 396 58.1
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.2e-101 374.4 396 58.1
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.6e-101 373.2 438 53.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.4e-101 372.9 399 59.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 3.4e-101 372.9 436 56.2
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.4e-101 372.9 398 58.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 3.4e-101 372.9 393 57.8
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.9e-101 371.3 396 57.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.2e-100 370.2 399 59.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.7e-100 369.4 396 56.6
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.9e-100 369.0 399 59.1
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 6.4e-100 368.6 404 59.4
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.4e-100 368.6 399 58.9
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.4e-100 368.6 399 59.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 8.3e-100 368.2 438 53.4
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.4e-99 367.5 400 60.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.9e-99 367.1 402 58.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.4e-99 366.7 432 54.2
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.2e-99 366.3 379 59.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 5.4e-99 365.5 439 55.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.4e-99 365.5 394 58.9
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 9.2e-99 364.8 395 58.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.6e-98 364.0 389 59.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.5e-98 362.8 427 55.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.5e-98 362.8 434 53.7
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.7e-97 360.5 394 59.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.7e-97 360.5 444 54.7
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.3e-97 360.1 395 56.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.0e-97 359.8 395 56.2
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 5.1e-97 359.0 397 58.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 8.6e-97 358.2 380 60.5
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.9e-96 357.1 399 55.9
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.9e-96 357.1 400 57.5
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 7.3e-96 355.1 396 56.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 7.3e-96 355.1 434 54.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 9.5e-96 354.8 427 52.7
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.2e-95 354.4 387 57.9
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.6e-95 354.0 384 58.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.8e-95 353.2 428 52.3
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.6e-95 352.8 406 55.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-94 351.3 427 53.4
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 6.8e-94 348.6 390 57.2
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 6.8e-94 348.6 392 55.6
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 5.8e-93 345.5 426 53.5
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.8e-93 345.5 385 59.0
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 7.6e-93 345.1 396 57.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 9.9e-93 344.7 389 56.8
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-92 344.4 400 56.0
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.8e-92 342.8 405 57.0
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 6.4e-92 342.0 449 52.3
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-91 341.3 396 53.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.4e-91 340.9 439 54.9
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 4.2e-91 339.3 393 57.0
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 7.1e-91 338.6 399 55.6
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.2e-90 337.8 427 52.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.2e-90 337.8 398 55.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.5e-90 336.3 421 52.3
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 4.6e-90 335.9 401 54.9
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.5e-88 330.9 467 50.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-87 327.8 399 55.1
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.1e-87 327.0 437 52.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.8e-87 325.9 396 57.3
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 6.2e-87 325.5 438 49.1
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.2e-87 325.5 432 53.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.1e-86 324.7 392 54.1
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.4e-86 323.6 368 54.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.9e-84 316.6 377 54.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 8.4e-84 315.1 395 52.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.4e-83 314.3 396 55.6
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.4e-83 314.3 392 53.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.1e-83 312.0 389 51.4
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 9.3e-83 311.6 397 52.6
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 6.0e-82 308.9 430 51.2
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.0e-81 308.1 432 50.2
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.3e-81 307.8 394 51.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.1e-80 304.7 392 52.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.3e-80 302.8 379 52.5
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 4.3e-80 302.8 305 60.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.6e-80 302.4 316 56.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.1e-79 300.4 379 52.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 4.8e-79 299.3 380 53.2
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 4.8e-79 299.3 380 53.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 6.2e-79 298.9 392 53.1
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.1e-78 296.6 277 62.8
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-77 294.3 408 51.5
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.8e-77 292.4 394 52.8
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.3e-76 291.2 397 48.9
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.9e-76 290.0 396 51.3
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.9e-76 289.3 396 50.5
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.9e-76 289.3 430 48.8
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.4e-76 288.9 396 51.0
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.0e-73 281.6 401 46.9
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.1e-72 278.1 423 49.4
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 9.0e-70 268.5 405 49.6
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.2e-66 258.1 283 56.5
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 4.6e-66 256.1 313 53.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.5e-64 251.1 334 48.5
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 3.7e-63 246.5 426 43.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 9.0e-62 241.9 409 45.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.2e-61 241.5 424 43.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.1e-58 230.7 274 55.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.3e-57 228.0 279 58.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 5.1e-57 226.1 277 53.1
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.3e-56 223.4 395 43.8
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 5.7e-56 222.6 226 56.6
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.3e-55 221.5 333 47.1
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.6e-55 221.1 284 53.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.8e-54 217.6 278 56.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.4e-53 213.4 441 39.9
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.0e-49 201.8 283 51.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 5.1e-49 199.5 282 51.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 4.3e-48 196.4 286 51.4
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 7.4e-48 195.7 280 51.1
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-47 194.9 274 48.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.9e-46 189.1 189 55.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 9.1e-46 188.7 281 50.9
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.5e-45 186.4 353 41.9
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 7.7e-45 185.7 136 68.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.9e-44 183.7 135 68.9
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 9.4e-43 178.7 238 48.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.7e-42 177.2 365 41.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-37 161.4 162 60.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 4.7e-34 149.8 451 31.3
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.9e-27 127.9 199 49.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.8e-25 121.3 100 65.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 4.0e-25 120.2 120 55.0
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 7.5e-24 115.9 209 45.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.2e-20 104.4 106 53.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.0e-16 91.3 124 48.4
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.6e-16 90.9 88 56.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.2e-10 72.0 86 46.5
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.9e-07 60.8 37 73.0
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.1e-06 57.0 108 35.2


User provided reference genes

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