Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.5e-147 524.2 256 100.0
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 5.4e-86 321.6 301 57.5
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.7e-85 319.3 304 56.2
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.7e-85 319.3 304 56.2
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.8e-84 315.5 304 56.2
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.6e-84 314.7 304 56.2
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 6.6e-84 314.7 304 54.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.1e-83 313.9 302 54.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.5e-83 312.8 303 55.4
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 5.6e-83 311.6 303 55.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.6e-83 311.6 303 55.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.1e-82 309.7 304 54.9
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-82 309.7 304 53.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.8e-82 309.3 302 54.3
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 2.8e-82 309.3 305 54.4
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.7e-82 308.5 302 54.0
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.7e-82 308.5 302 54.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 4.7e-82 308.5 304 53.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.1e-82 308.1 302 54.0
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.0e-81 307.4 302 53.3
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.4e-81 307.0 305 53.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.8e-81 306.6 302 54.3
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.3e-81 306.2 303 54.5
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 4.0e-81 305.4 304 53.3
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.0e-81 305.4 304 52.6
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.2e-81 305.1 302 54.0
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.8e-81 304.7 302 53.0
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-80 303.9 302 53.3
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 2.0e-80 303.1 303 51.5
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.6e-80 302.8 303 54.1
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 3.4e-80 302.4 302 51.3
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.4e-80 302.4 303 52.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 4.4e-80 302.0 301 53.5
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 4.4e-80 302.0 287 55.4
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.8e-80 301.6 304 51.6
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 5.8e-80 301.6 302 52.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 7.5e-80 301.2 302 51.7
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.5e-80 301.2 302 51.3
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 7.5e-80 301.2 285 55.1
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 7.5e-80 301.2 303 53.1
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 7.5e-80 301.2 303 53.8
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.5e-80 301.2 304 53.0
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 9.8e-80 300.8 302 53.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.7e-79 300.1 302 53.0
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.9e-79 299.3 304 54.3
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.7e-79 298.9 304 53.6
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.4e-79 298.1 302 51.0
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 6.4e-79 298.1 303 51.5
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 6.4e-79 298.1 302 52.0
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 6.4e-79 298.1 303 52.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 6.4e-79 298.1 302 52.3
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.1e-78 297.4 302 51.0
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 1.4e-78 297.0 302 52.6
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.2e-78 295.8 302 50.7
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 5.4e-78 295.0 302 51.0
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 5.4e-78 295.0 302 50.7
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 5.4e-78 295.0 306 52.6
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.0e-78 294.7 291 55.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 7.0e-78 294.7 302 51.3
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 7.0e-78 294.7 302 54.0
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 9.2e-78 294.3 302 53.6
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 9.2e-78 294.3 331 50.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 9.2e-78 294.3 304 53.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.2e-77 293.9 303 52.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.6e-77 293.5 302 51.0
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.6e-77 293.5 302 51.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.7e-77 292.7 298 53.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 2.7e-77 292.7 304 53.9
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.5e-77 292.4 275 55.6
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 4.6e-77 292.0 301 51.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 4.6e-77 292.0 302 51.3
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.6e-77 292.0 304 52.3
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 6.0e-77 291.6 300 51.3
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 6.0e-77 291.6 303 52.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 6.0e-77 291.6 303 52.1
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 6.0e-77 291.6 303 52.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.0e-76 290.8 304 51.6
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.0e-76 290.8 302 53.6
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.0e-76 290.8 304 51.3
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.0e-76 290.8 300 52.3
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.3e-76 290.4 302 51.0
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.3e-76 290.4 302 52.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.3e-76 290.4 327 49.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.3e-76 289.7 303 51.8
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 5.0e-76 288.5 302 51.0
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.1e-75 287.3 303 50.2
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.9e-75 286.6 303 51.5
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 5.6e-75 285.0 267 52.1
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.3e-75 284.6 302 53.6
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 7.3e-75 284.6 302 49.0
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 9.5e-75 284.3 303 50.8
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.1e-74 283.1 301 51.8
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.1e-74 283.1 303 51.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.0e-74 281.2 303 50.5
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.1e-73 280.8 303 51.2
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.4e-73 280.4 313 49.5
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.0e-73 278.9 305 51.8
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.0e-73 278.9 301 49.8
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 6.8e-73 278.1 319 48.3
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.8e-73 278.1 304 51.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.8e-73 278.1 304 51.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.9e-73 277.7 304 51.3
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 8.9e-73 277.7 286 51.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.6e-72 276.2 304 49.0
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.4e-72 275.8 301 47.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 9.8e-72 274.2 280 53.6
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.3e-71 273.9 274 55.5
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.2e-71 273.1 285 50.2
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-70 270.8 295 50.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.0e-68 264.2 297 49.2
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.0e-68 264.2 234 56.8
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.0e-68 264.2 261 53.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.0e-68 264.2 367 43.9
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.5e-67 260.4 228 55.3
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.1e-66 256.5 277 51.6
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 5.8e-64 248.4 268 51.1
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 7.5e-64 248.1 309 44.7
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.2e-63 246.5 302 46.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.1e-61 240.0 266 51.9
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.5e-61 239.2 276 49.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.0e-60 236.1 329 43.8
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-59 233.4 283 44.9
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 6.2e-58 228.4 304 44.7
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.2e-57 225.3 169 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.9e-55 219.5 297 43.1
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.1e-54 217.6 190 56.3
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.9e-54 216.9 285 44.2
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 5.4e-54 215.3 298 42.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.3e-52 210.7 206 53.4
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.3e-52 209.9 233 46.8
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 7.3e-51 204.9 285 42.1
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.8e-50 203.0 219 53.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.3e-47 194.1 273 40.3
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.6e-45 187.2 221 47.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 7.3e-43 178.3 170 57.1
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 6.2e-42 175.3 170 57.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.1e-41 172.9 171 55.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.0e-41 172.6 205 50.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 3.4e-40 169.5 255 41.6
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 3.9e-36 156.0 126 61.9
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 5.1e-36 155.6 296 37.2
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 3.3e-35 152.9 276 37.0
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.6e-35 151.4 185 47.0
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.3e-34 151.0 171 48.5
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.6e-34 150.6 170 49.4
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-33 147.5 193 45.6
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 1.5e-32 144.1 149 47.0
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.8e-32 142.1 266 38.0
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.6e-32 141.7 110 59.1
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.4e-31 138.3 77 85.7
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 8.7e-28 128.3 147 49.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 1.6e-26 124.0 196 37.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 5.3e-25 119.0 228 36.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.0e-24 117.1 303 28.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 3.2e-22 109.8 93 58.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 4.6e-21 105.9 185 34.6
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.0e-21 105.5 130 46.9
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.4e-17 93.6 166 36.7
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.0e-15 88.2 206 30.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.9e-14 84.0 133 42.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.5e-14 83.6 67 59.7
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.0e-12 76.6 91 47.3
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 1.2e-08 64.7 47 59.6


User provided reference genes

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