Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 0.0e+00 1315.8 669 100.0
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 3.3e-252 875.2 674 67.2
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 1.8e-242 842.8 646 66.6
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 1.1e-239 833.6 671 63.8
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.4e-239 833.2 645 65.6
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 9.3e-239 830.5 647 65.1
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 5.1e-237 824.7 671 62.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.9e-236 822.8 645 64.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 4.3e-236 821.6 653 63.6
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.3e-235 820.1 667 62.5
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 2.8e-235 818.9 648 62.2
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.2e-233 813.5 650 62.2
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.5e-233 813.1 647 63.7
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.5e-233 813.1 649 64.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 2.6e-233 812.4 667 62.7
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 4.5e-233 811.6 667 62.2
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 5.8e-233 811.2 653 62.5
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.0e-232 810.4 653 62.3
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.3e-232 810.1 667 61.9
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 6.5e-232 807.7 653 62.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.1e-231 807.0 671 61.7
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 2.5e-231 805.8 672 61.6
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 5.5e-231 804.7 702 59.0
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 3.5e-230 802.0 672 61.5
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 6.0e-230 801.2 665 61.5
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 6.0e-230 801.2 668 60.9
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 7.9e-230 800.8 669 61.3
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 3.0e-229 798.9 649 62.2
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 6.7e-229 797.7 671 61.3
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 3.7e-227 792.0 675 61.3
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 4.8e-227 791.6 672 61.3
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 6.3e-227 791.2 668 60.5
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 8.2e-227 790.8 673 60.5
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.1e-226 790.4 703 61.0
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.1e-226 788.9 671 60.4
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 3.1e-226 788.9 671 61.0
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.1e-226 788.9 652 61.3
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 5.3e-226 788.1 670 60.3
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 5.3e-226 788.1 645 62.0
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 9.0e-226 787.3 667 60.1
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 2.0e-225 786.2 666 60.5
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 7.6e-225 784.3 647 63.2
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 7.6e-225 784.3 646 62.2
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 9.3e-223 777.3 694 58.9
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.2e-222 776.9 671 61.8
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 2.1e-222 776.2 667 61.0
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 2.1e-222 776.2 675 59.3
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.6e-222 775.4 665 60.5
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 3.6e-222 775.4 664 60.7
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 7.9e-222 774.2 673 59.3
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 7.9e-222 774.2 647 61.2
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 5.1e-221 771.5 647 60.9
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 8.7e-221 770.8 653 60.9
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 4.3e-220 768.5 647 60.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 4.8e-219 765.0 671 59.8
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 4.8e-219 765.0 666 58.9
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.1e-218 763.8 649 59.8
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 6.9e-218 761.1 670 61.0
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 4.5e-217 758.4 671 58.1
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.4e-215 753.4 649 58.2
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 9.4e-215 750.7 679 57.7
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.4e-213 746.9 679 57.1
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 2.3e-213 746.1 667 58.3
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 6.7e-213 744.6 676 57.2
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.5e-212 743.4 734 54.5
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 3.3e-212 742.3 665 57.1
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.3e-211 740.3 697 56.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.2e-211 739.6 679 56.4
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.2e-211 739.6 634 61.2
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 2.8e-211 739.2 669 57.1
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.1e-210 737.3 724 54.4
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 5.3e-210 734.9 682 56.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 3.4e-209 732.3 665 57.1
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 3.4e-209 732.3 668 57.0
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 4.5e-209 731.9 664 57.2
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.7e-208 729.9 636 57.7
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 2.9e-208 729.2 649 59.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 6.1e-206 721.5 727 53.2
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 3.0e-205 719.2 581 63.2
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.7e-203 712.2 671 56.9
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 4.8e-203 711.8 674 56.5
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 9.1e-202 707.6 691 54.4
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.7e-200 703.4 646 56.3
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 5.0e-200 701.8 738 51.6
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.1e-198 696.4 576 61.8
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.0e-197 692.6 663 55.1
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 7.5e-196 688.0 573 61.6
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 2.0e-193 679.9 640 56.6
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 1.7e-192 676.8 697 53.2
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 6.5e-192 674.9 565 61.2
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.6e-190 670.2 667 54.3
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.7e-190 669.5 558 61.8
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.0e-184 651.0 666 52.6
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-184 650.2 594 57.6
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.8e-181 638.3 670 53.0
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 2.4e-178 629.8 515 63.9
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.0e-176 624.4 650 51.5
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 3.3e-175 619.4 667 52.0
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 2.1e-174 616.7 686 49.1
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 3.6e-174 615.9 635 52.3
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 3.3e-159 566.2 498 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 8.1e-150 535.0 702 45.4
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 3.9e-136 489.6 611 47.3
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.0e-117 426.4 352 60.8
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 9.1e-101 372.1 310 62.3
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 1.7e-91 341.3 311 55.3
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.0e-76 291.2 240 62.1
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.7e-75 288.1 356 47.5
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 3.8e-75 287.0 368 46.5
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 1.5e-74 285.0 650 32.6
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.8e-64 249.6 334 44.3
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 3.2e-53 214.2 308 40.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 5.4e-45 186.8 172 53.5
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.5e-42 178.7 315 35.6
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 7.5e-39 166.4 631 27.1
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 2.1e-33 148.3 144 54.2
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 4.2e-29 134.0 174 44.8
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.2e-25 122.5 113 54.0
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 6.9e-24 116.7 115 55.7
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 6.0e-20 103.6 80 62.5
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.0e-19 102.8 84 53.6
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-14 85.9 53 66.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 4.6e-12 77.4 103 42.7
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.0e-12 77.0 67 53.7
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.0e-12 77.0 67 53.7
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.0e-11 74.7 64 56.2
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 3.9e-11 74.3 47 68.1
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.1e-10 72.8 67 52.2
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 54.8
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.9e-10 72.0 62 54.8
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 8.1e-09 66.6 42 73.8
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 8.1e-09 66.6 42 71.4
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.4e-08 65.9 74 44.6
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-08 65.1 38 73.7
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.2e-07 62.8 42 71.4


User provided reference genes

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