Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0111G034 Amborella trichopoda HOM05D026178 ORTHO05D018286 0.0e+00 1164.1 595 100.0
MBI18_g34588_MAGBIO Magnolia biondii HOM05D026178 ORTHO05D018286 2.5e-54 217.6 610 32.0
SEGI_16611 Sequoiadendron giganteum HOM05D001641 ORTHO05D001667 1.1e-36 159.1 692 27.6
HPP92_004968 Vanilla planifolia HOM05D029853 ORTHO05D018286 1.5e-25 122.1 604 26.3
Oeu004615.1 Olea europaea HOM05D001641 ORTHO05D001667 4.7e-24 117.1 706 25.1
CDE02G2838 Ceratophyllum demersum HOM05D026178 ORTHO05D018286 1.4e-23 115.5 598 25.4
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 3.3e-22 110.9 702 24.9
PSO339G0414 Papaver somniferum HOM05D001641 ORTHO05D001667 5.7e-22 110.2 726 25.2
TAR633G1677 Trochodendron aralioides HOM05D001641 ORTHO05D001667 7.5e-22 109.8 715 25.9
ATR0618G326 Amborella trichopoda HOM05D001641 ORTHO05D001667 2.8e-21 107.8 406 30.3
Aqoxy2G00992 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 3.7e-21 107.5 701 26.2
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 1.1e-20 105.9 712 25.0
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 1.4e-20 105.5 701 24.3
MSTRG.26798 Avicennia marina HOM05D001641 ORTHO05D001667 4.1e-20 104.0 710 23.2
Nn2g11369 Nelumbo nucifera HOM05D001641 ORTHO05D001667 2.0e-19 101.7 702 24.2
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 3.5e-19 100.9 681 24.5
Os03g0148400 Oryza sativa ssp. japonica HOM05D029853 ORTHO05D018286 5.9e-19 100.1 370 28.9
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 3.8e-18 97.4 618 24.4
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 3.8e-18 97.4 705 24.3
MBI05_g03457_MAGBIO Magnolia biondii HOM05D001641 ORTHO05D001667 5.0e-18 97.1 284 31.7
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 8.5e-18 96.3 715 25.0
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 1.1e-17 95.9 680 25.4
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 1.1e-17 95.9 710 24.4
Zm00001eb403010 Zea mays HOM05D029853 ORTHO05D018286 1.5e-17 95.5 171 39.8
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 1.9e-17 95.1 704 25.9
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 1.9e-17 95.1 660 25.2
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 1.9e-17 95.1 717 24.5
PSO801G0666 Papaver somniferum HOM05D001641 ORTHO05D001667 1.9e-17 95.1 278 32.0
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 2.5e-17 94.7 695 24.6
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 4.2e-17 94.0 706 24.4
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 4.2e-17 94.0 703 23.6
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 9.4e-17 92.8 699 23.9
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.2e-16 92.4 614 24.3
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.1e-16 91.7 702 23.6
DCAR_015457 Daucus carota HOM05D001641 ORTHO05D001667 2.7e-16 91.3 651 24.7
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 2.7e-16 91.3 707 23.8
CSS0004795 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 3.6e-16 90.9 283 31.1
CSS0016472 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 3.6e-16 90.9 283 31.1
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 3.6e-16 90.9 698 22.9
DCAR_028828 Daucus carota HOM05D001641 ORTHO05D001667 4.7e-16 90.5 268 32.5
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 6.1e-16 90.1 672 23.8
Cfa011641 Carpinus fangiana HOM05D001641 ORTHO05D001667 6.1e-16 90.1 633 26.4
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 6.1e-16 90.1 698 24.1
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 6.1e-16 90.1 711 24.2
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 8.0e-16 89.7 675 24.4
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 2.3e-15 88.2 698 23.8
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 3.0e-15 87.8 714 23.8
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 3.0e-15 87.8 630 24.3
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 5.2e-15 87.0 705 24.7
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 6.8e-15 86.7 728 24.5
ClCG02G019720 Citrullus lanatus HOM05D001641 ORTHO05D001667 1.2e-14 85.9 599 25.4
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 1.5e-14 85.5 721 24.5
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 2.0e-14 85.1 709 25.5
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 2.0e-14 85.1 630 24.4
TWI75G0667 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 2.6e-14 84.7 636 25.3
Medtr3g462680 Medicago truncatula HOM05D001641 ORTHO05D001667 3.4e-14 84.3 647 25.3
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 3.4e-14 84.3 698 23.6
MSTRG.5598 Avicennia marina HOM05D001641 ORTHO05D001667 5.7e-14 83.6 711 22.6
Haze_24247 Corylus avellana HOM05D001641 ORTHO05D001667 5.7e-14 83.6 636 25.6
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 5.7e-14 83.6 722 23.5
TWI79G0350 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 5.7e-14 83.6 625 24.2
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 7.5e-14 83.2 723 23.5
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 7.5e-14 83.2 732 23.8
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 1.3e-13 82.4 678 22.4
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.7e-13 82.0 682 25.5
Lj2C80T3 Lonicera japonica HOM05D001641 ORTHO05D001667 2.2e-13 81.6 653 24.2
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 2.2e-13 81.6 689 21.9
Migut.L01994 Erythranthe guttata HOM05D001641 ORTHO05D001667 2.8e-13 81.3 696 22.8
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 3.7e-13 80.9 677 23.3
CDE06G2043 Ceratophyllum demersum HOM05D026178 ORTHO05D018286 4.8e-13 80.5 355 29.0
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 4.8e-13 80.5 723 23.4
SGA_v2.0_scaffold240G44106 Striga asiatica HOM05D001641 ORTHO05D001667 6.3e-13 80.1 692 24.3
CiPaw.13G082000 Carya illinoinensis HOM05D001641 ORTHO05D001667 1.1e-12 79.3 622 22.8
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.1e-12 79.3 713 23.8
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.1e-12 79.3 712 24.0
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 1.4e-12 79.0 629 25.0
CSS0035257 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 1.8e-12 78.6 180 38.9
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.8e-12 78.6 680 22.6
Ca_14902_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 4.1e-12 77.4 611 26.2
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 4.1e-12 77.4 729 21.9
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 4.1e-12 77.4 715 23.8
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 5.4e-12 77.0 711 22.2
Sed0014233 Sechium edule HOM05D001641 ORTHO05D001667 9.1e-12 76.3 381 27.3
MELO3C025873.2 Cucumis melo HOM05D001641 ORTHO05D001667 1.2e-11 75.9 601 25.3
CDE03G0073 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 1.6e-11 75.5 672 23.2
CsaV3_3G034150 Cucumis sativus L. HOM05D001641 ORTHO05D001667 1.6e-11 75.5 689 24.4
Rhsim05G0206300 Rhododendron simsii HOM05D001641 ORTHO05D001667 1.6e-11 75.5 269 29.7
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.7e-11 74.7 725 22.1
SalBow5G3786 Salvia bowleyana HOM05D001641 ORTHO05D001667 2.7e-11 74.7 682 22.1
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 3.5e-11 74.3 674 23.7
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 4.5e-11 73.9 725 22.1
Lalb_Chr18g0050681 Lupinus albus HOM05D001641 ORTHO05D001667 4.5e-11 73.9 629 22.9
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 4.5e-11 73.9 720 24.7
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 4.5e-11 73.9 698 24.1
PGSC0003DMG400020347 Solanum tuberosum HOM05D001641 ORTHO05D001667 1.0e-10 72.8 703 22.2
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.3e-10 72.4 678 23.6
Oeu028729.2 Olea europaea HOM05D001641 ORTHO05D001667 1.7e-10 72.0 719 23.8
Solyc09g014160.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 2.2e-10 71.6 703 22.3
Sed0016143 Sechium edule HOM05D001641 ORTHO05D001667 3.8e-10 70.9 609 25.1
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 6.5e-10 70.1 697 22.4
Glyma.11G176900 Glycine max HOM05D001641 ORTHO05D001667 6.5e-10 70.1 646 23.2
Glyma.18G064700 Glycine max HOM05D001641 ORTHO05D001667 8.5e-10 69.7 648 23.3
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 8.5e-10 69.7 270 25.9
CsaV3_6G016420 Cucumis sativus L. HOM05D001641 ORTHO05D001667 1.1e-09 69.3 604 24.7
QL01p027079 Quercus lobata HOM05D001641 ORTHO05D001667 1.5e-09 68.9 639 25.0
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 1.9e-09 68.6 705 22.4
CAN.G355.13 Capsicum annuum HOM05D001641 ORTHO05D001667 1.9e-09 68.6 637 22.0
Sed0017639 Sechium edule HOM05D001641 ORTHO05D001667 2.5e-09 68.2 238 29.0
ECA236G1576 Erigeron canadensis HOM05D001641 ORTHO05D001667 3.2e-09 67.8 169 35.5
Lalb_Chr10g0103211 Lupinus albus HOM05D001641 ORTHO05D001667 3.2e-09 67.8 633 22.7
MD03G1077100 Malus domestica HOM05D001641 ORTHO05D001667 3.2e-09 67.8 618 22.7
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 3.2e-09 67.8 723 22.4
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 4.2e-09 67.4 667 23.2
Sopen09g007030 Solanum pennellii HOM05D001641 ORTHO05D001667 4.2e-09 67.4 664 23.3
Dinv28606 Davidia involucrata HOM05D001641 ORTHO05D001667 5.5e-09 67.0 680 22.6
FvH4_3g38100 Fragaria vesca HOM05D001641 ORTHO05D001667 5.5e-09 67.0 610 23.6
FAN11G1279 Fragaria x ananassa HOM05D001641 ORTHO05D001667 5.5e-09 67.0 610 23.6
Phvul.008G107800 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 5.5e-09 67.0 711 22.6
Gohir.D11G347700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 9.5e-09 66.2 587 23.0
Hma1.2p1_0227F.1_g096230 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 9.5e-09 66.2 629 23.1
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 9.5e-09 66.2 758 23.6
Psat0s2622g0040 Pisum sativum HOM05D001641 ORTHO05D001667 9.5e-09 66.2 612 23.7
CsaV3_4G026000 Cucumis sativus L. HOM05D001641 ORTHO05D001667 1.6e-08 65.5 694 23.5
MSTRG.10231 Avicennia marina HOM05D001641 ORTHO05D001667 2.1e-08 65.1 184 33.2
Potri.009G042200 Populus trichocarpa HOM05D001641 ORTHO05D001667 2.1e-08 65.1 615 22.9
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 2.8e-08 64.7 732 23.5
MELO3C009191.2 Cucumis melo HOM05D001641 ORTHO05D001667 2.8e-08 64.7 683 23.7
SGA_v2.0_scaffold106G30523 Striga asiatica HOM05D001641 ORTHO05D001667 2.8e-08 64.7 125 36.8
Lalb_Chr17g0344941 Lupinus albus HOM05D001641 ORTHO05D001667 3.6e-08 64.3 650 23.1
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 4.7e-08 63.9 697 23.7
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 4.7e-08 63.9 724 23.1
PSO384G4022 Papaver somniferum HOM05D001641 ORTHO05D001667 4.7e-08 63.9 217 28.1
Phvul.008G263500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 4.7e-08 63.9 363 27.8
ClCG04G007240 Citrullus lanatus HOM05D001641 ORTHO05D001667 6.1e-08 63.5 697 22.8
ECA247G1117 Erigeron canadensis HOM05D001641 ORTHO05D001667 6.1e-08 63.5 636 22.2
Migut.J00224 Erythranthe guttata HOM05D001641 ORTHO05D001667 6.1e-08 63.5 698 21.6
CiPaw.14G062200 Carya illinoinensis HOM05D001641 ORTHO05D001667 8.0e-08 63.2 638 23.0
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 8.0e-08 63.2 141 32.6
FAN21G3833 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.0e-07 62.8 614 23.1
HanXRQChr10g0286991 Helianthus annuus HOM05D001641 ORTHO05D001667 1.0e-07 62.8 694 23.3
VMungo0540G1478 Vigna mungo HOM05D001641 ORTHO05D001667 1.0e-07 62.8 381 27.3
FAN25G2947 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.4e-07 62.4 612 23.0
RcHm_v2.0_Chr3g0463831 Rosa chinensis HOM05D001641 ORTHO05D001667 1.4e-07 62.4 748 23.1
Aqoxy1G00708 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 1.8e-07 62.0 692 22.5
CANSAT21G2528 Cannabis sativa HOM05D001641 ORTHO05D001667 1.8e-07 62.0 644 22.7
FAN16G0951 Fragaria x ananassa HOM05D001641 ORTHO05D001667 3.0e-07 61.2 612 23.0
SalBow5G3431 Salvia bowleyana HOM05D001641 ORTHO05D001667 3.0e-07 61.2 619 23.9
PSO339G5641 Papaver somniferum HOM05D001641 ORTHO05D001667 6.8e-07 60.1 221 27.6
TPR.G1584 Trifolium pratense HOM05D001641 ORTHO05D001667 8.8e-07 59.7 757 21.7
Atru.chr3.4067 Acer truncatum HOM05D001641 ORTHO05D001667 1.5e-06 58.9 352 28.1
Glyma.07G144900 Glycine max HOM05D001641 ORTHO05D001667 2.0e-06 58.5 728 23.6
Phvul.006G066100 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 2.0e-06 58.5 388 26.0
SGA_v2.0_scaffold75G24999 Striga asiatica HOM05D001641 ORTHO05D001667 2.0e-06 58.5 264 29.5
PGR119G0454 Punica granatum HOM05D001641 ORTHO05D001667 2.6e-06 58.2 265 27.9
RcHm_v2.0_Chr5g0068451 Rosa chinensis HOM05D001641 ORTHO05D001667 2.6e-06 58.2 601 23.8
CDE04G1343 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 3.4e-06 57.8 384 24.5
Os01g0852400 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 3.4e-06 57.8 390 21.3
unitig_37.g12667 Utricularia gibba HOM05D001641 ORTHO05D001667 4.4e-06 57.4 685 21.8
HanXRQChr08g0220551 Helianthus annuus HOM05D001641 ORTHO05D001667 5.7e-06 57.0 651 22.4
Lalb_Chr13g0291271 Lupinus albus HOM05D001641 ORTHO05D001667 5.7e-06 57.0 394 24.4
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 7.5e-06 56.6 659 22.8
MD11G1081400 Malus domestica HOM05D001641 ORTHO05D001667 7.5e-06 56.6 631 23.0
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 9.8e-06 56.2 711 24.5


User provided reference genes

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