Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 5.6e-71 271.2 139 100.0
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 8.7e-24 114.4 66 89.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.5e-23 112.8 125 52.0
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 4.3e-23 112.1 134 52.2
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.6e-23 111.7 133 51.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 5.6e-23 111.7 124 54.8
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 4.0e-21 105.5 153 43.8
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.2e-20 104.0 133 47.4
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.6e-20 102.8 138 46.4
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.6e-20 102.8 136 48.5
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-20 102.4 134 48.5
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.5e-20 102.1 132 47.7
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 5.8e-20 101.7 128 48.4
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.0e-19 100.9 128 49.2
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.3e-19 100.5 131 47.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.7e-19 100.1 120 51.7
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.7e-19 100.1 132 47.7
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.7e-19 100.1 132 47.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.7e-19 100.1 143 44.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.2e-19 99.8 127 47.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.8e-19 99.0 122 50.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.8e-19 99.0 125 52.8
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 4.9e-19 98.6 138 47.1
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.9e-19 98.6 120 50.8
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-19 98.2 127 47.2
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.5e-19 98.2 134 49.3
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.2e-18 95.5 131 46.6
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 7.1e-18 94.7 130 46.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-17 93.2 149 44.3
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.1e-17 93.2 135 45.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 4.6e-17 92.0 125 47.2
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.0e-17 91.7 140 46.4
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 6.0e-17 91.7 130 46.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 7.9e-17 91.3 128 46.1
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.3e-16 90.5 116 47.4
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.8e-16 90.1 128 46.9
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.8e-16 90.1 138 42.8
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.3e-16 89.7 127 44.1
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.3e-16 89.7 127 44.1
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.3e-16 89.7 127 44.1
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.3e-16 89.7 70 64.3
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.3e-16 89.7 72 62.5
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 2.3e-16 89.7 128 44.5
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.0e-16 89.4 127 44.1
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.9e-16 89.0 140 42.1
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.9e-16 89.0 130 44.6
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.9e-16 89.0 124 46.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.9e-16 89.0 124 46.8
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 5.1e-16 88.6 127 43.3
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.7e-16 88.2 125 44.0
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 8.7e-16 87.8 127 44.1
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.9e-15 86.7 130 46.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.3e-15 85.9 127 44.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.3e-15 85.9 134 41.0
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.3e-15 85.5 143 42.0
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 5.7e-15 85.1 140 40.7
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 5.7e-15 85.1 148 40.5
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 7.4e-15 84.7 127 44.1
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 9.6e-15 84.3 133 45.1
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 9.6e-15 84.3 123 45.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.3e-14 84.0 121 46.3
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.3e-14 84.0 124 45.2
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.3e-14 84.0 128 45.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.3e-14 84.0 128 45.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-14 83.6 140 40.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-14 83.6 140 40.0
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.6e-14 83.6 140 40.0
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.6e-14 83.6 89 49.4
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.1e-14 83.2 108 47.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.8e-14 82.8 123 44.7
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.8e-14 82.8 128 45.3
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 3.7e-14 82.4 133 43.6
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.7e-14 82.4 130 46.9
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.2e-14 81.6 123 43.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 6.2e-14 81.6 128 43.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-13 80.9 132 43.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.4e-13 80.5 128 43.8
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-13 80.1 83 53.0
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.8e-13 80.1 100 48.0
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-13 79.7 81 51.9
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 3.1e-13 79.3 136 44.1
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 3.1e-13 79.3 132 43.9
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 6.9e-13 78.2 120 45.0
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.9e-13 78.2 114 46.5
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 9.0e-13 77.8 131 39.7
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.2e-12 77.4 86 51.2
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.5e-12 77.0 120 42.5
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.0e-12 76.6 111 45.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.6e-12 76.3 125 42.4
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.4e-12 75.9 92 50.0
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.4e-12 75.9 132 40.9
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.4e-12 75.9 125 44.0
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.4e-12 75.9 124 41.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 3.4e-12 75.9 123 41.5
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 3.4e-12 75.9 86 53.5
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 5.8e-12 75.1 130 43.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.3e-11 73.9 158 35.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.7e-11 73.6 76 56.6
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.7e-11 73.6 95 49.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.2e-11 73.2 87 50.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.2e-11 73.2 123 40.7
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.2e-11 73.2 142 43.7
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.2e-11 73.2 100 44.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.2e-11 73.2 140 37.9
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.9e-11 72.8 87 52.9
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.9e-11 72.8 124 41.9
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.9e-11 72.8 146 39.0
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.8e-11 72.4 123 40.7
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.8e-11 72.4 134 41.8
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 3.8e-11 72.4 132 40.9
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 3.8e-11 72.4 127 39.4
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.8e-11 72.4 135 38.5
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-11 72.0 73 52.1
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 5.0e-11 72.0 73 52.1
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.0e-11 72.0 138 39.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.0e-11 72.0 128 43.0
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 6.5e-11 71.6 81 50.6
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.5e-11 71.6 70 54.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.4e-10 70.5 123 39.8
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-10 70.5 118 44.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.4e-10 70.5 128 40.6
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.4e-10 70.5 123 42.3
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.9e-10 70.1 109 45.0
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.9e-10 70.1 123 40.7
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.9e-10 70.1 123 40.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.9e-10 70.1 124 40.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.9e-10 70.1 119 42.0
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.9e-10 70.1 78 48.7
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.5e-10 69.7 69 55.1
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 3.2e-10 69.3 121 42.1
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 3.2e-10 69.3 123 37.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 5.5e-10 68.6 141 42.6
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 7.1e-10 68.2 123 36.6
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 9.3e-10 67.8 70 50.0
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 9.3e-10 67.8 69 52.2
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-09 67.4 123 38.2
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 1.6e-09 67.0 139 39.6
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.6e-09 67.0 80 48.8
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.1e-09 66.6 127 40.9
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.7e-09 66.2 112 42.9
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.7e-09 66.2 136 40.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.5e-09 65.9 127 37.8
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 6.1e-09 65.1 118 38.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 6.1e-09 65.1 133 39.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 6.1e-09 65.1 73 46.6
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 7.9e-09 64.7 114 43.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.0e-08 64.3 105 42.9
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.0e-08 64.3 128 39.8
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.3e-08 63.9 75 46.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.3e-08 63.9 90 42.2
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.3e-08 63.9 124 38.7
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-08 63.5 72 43.1
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-08 63.5 72 43.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 2.3e-08 63.2 124 36.3
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.3e-08 63.2 159 34.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.3e-08 63.2 76 48.7
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 3.0e-08 62.8 75 49.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.9e-08 62.4 71 50.7
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.9e-08 62.4 130 39.2
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 5.1e-08 62.0 137 39.4
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 5.1e-08 62.0 123 40.7
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 5.1e-08 62.0 131 38.9
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 6.7e-08 61.6 126 38.9
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-07 60.1 58 55.2
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.5e-07 59.7 125 36.0
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.5e-07 59.7 90 43.3
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 3.3e-07 59.3 123 38.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 4.3e-07 58.9 122 35.2
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.4e-07 58.2 154 31.8
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 9.7e-07 57.8 124 35.5
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.6e-06 57.0 131 35.1
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.2e-06 56.6 88 44.3
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 2.8e-06 56.2 76 43.4
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 4.8e-06 55.5 106 41.5
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.8e-06 55.5 129 34.9


User provided reference genes

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