Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 7.8e-197 690.3 346 100.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.6e-128 462.6 339 65.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 6.7e-124 448.0 344 64.0
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 4.4e-123 445.3 344 63.4
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 4.8e-122 441.8 332 63.9
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.1e-121 440.7 339 63.7
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 5.3e-121 438.3 339 64.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.0e-120 436.4 335 63.0
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.9e-119 432.6 346 61.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 4.2e-118 428.7 337 62.9
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 5.5e-118 428.3 350 61.1
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 2.7e-117 426.0 337 62.6
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.9e-116 422.2 336 61.9
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.2e-116 421.8 338 61.8
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.5e-115 420.2 334 61.4
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.6e-115 419.5 336 61.3
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 7.4e-115 417.9 340 61.5
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.2e-114 416.4 335 59.4
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 6.3e-114 414.8 338 58.9
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.2e-114 414.5 341 60.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.8e-113 413.3 338 61.2
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.4e-113 412.9 320 62.8
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 5.3e-113 411.8 339 60.2
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 7.0e-113 411.4 331 60.1
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.5e-112 409.1 338 58.9
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 4.5e-112 408.7 334 62.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 5.9e-112 408.3 341 61.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.0e-111 407.5 312 61.9
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 1.0e-111 407.5 340 60.0
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.3e-111 407.1 336 60.4
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.0e-111 405.2 317 59.3
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 8.5e-111 404.4 336 61.9
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.9e-110 403.3 338 59.2
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.6e-109 400.2 331 60.4
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 3.6e-109 399.1 339 58.7
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 4.7e-109 398.7 335 60.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 8.0e-109 397.9 326 58.9
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 2.3e-108 396.4 312 62.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.0e-108 396.0 339 57.5
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.5e-107 393.7 363 55.1
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 2.0e-107 393.3 339 57.8
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.6e-107 392.9 326 60.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 3.3e-107 392.5 337 57.9
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 3.3e-107 392.5 338 56.2
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 4.4e-107 392.1 339 56.3
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 7.5e-107 391.3 339 57.5
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.5e-107 391.3 336 57.7
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 7.5e-107 391.3 338 58.6
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.7e-106 390.2 339 56.3
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.7e-106 390.2 339 56.6
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 2.8e-106 389.4 340 56.8
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 3.7e-106 389.0 330 57.6
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 3.7e-106 389.0 330 57.0
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 6.3e-106 388.3 343 56.3
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 1.1e-105 387.5 337 55.5
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.4e-105 387.1 340 56.2
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.4e-105 387.1 344 58.4
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.4e-105 387.1 344 58.4
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.4e-105 386.3 345 57.7
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.1e-105 386.0 313 61.0
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 5.3e-105 385.2 316 59.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.3e-105 385.2 336 56.8
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.0e-105 384.8 339 55.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 7.0e-105 384.8 334 56.0
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.2e-104 384.0 343 56.9
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.6e-104 383.6 336 57.1
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 1.6e-104 383.6 332 55.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 2.0e-104 383.3 332 58.7
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.0e-104 383.3 341 56.9
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.0e-104 383.3 341 56.9
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.0e-104 383.3 341 56.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 3.5e-104 382.5 348 55.7
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 3.5e-104 382.5 348 55.7
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.5e-104 382.5 345 57.4
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 5.9e-104 381.7 319 58.9
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-103 380.9 339 56.9
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-103 380.9 339 56.9
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 2.2e-103 379.8 339 56.6
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.8e-103 379.0 307 60.3
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 3.8e-103 379.0 337 56.4
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 3.8e-103 379.0 310 58.4
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 1.5e-102 377.1 355 54.6
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.5e-102 376.3 312 58.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 4.2e-102 375.6 332 56.6
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.5e-102 375.2 339 55.2
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 5.5e-102 375.2 338 54.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 6.1e-101 371.7 340 55.0
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 6.1e-101 371.7 334 56.0
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.4e-100 370.5 337 53.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 5.2e-100 368.6 313 58.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-99 367.5 332 56.3
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 9.8e-99 364.4 335 54.9
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 9.8e-99 364.4 345 52.8
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 2.2e-98 363.2 336 56.8
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.2e-96 357.5 338 51.5
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-96 357.5 338 51.5
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.7e-96 354.8 328 55.2
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-94 350.5 339 51.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.2e-93 347.4 332 51.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.6e-93 347.1 316 53.2
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.6e-93 345.9 307 56.7
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.7e-93 345.5 334 54.5
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 8.0e-93 344.7 310 56.1
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.0e-92 344.4 340 51.2
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 6.3e-90 335.1 329 51.4
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 3.1e-89 332.8 335 49.3
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.0e-88 330.1 336 47.9
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 3.5e-88 329.3 267 59.2
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.5e-88 328.9 341 48.7
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.0e-87 327.8 317 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.3e-87 327.4 318 49.1
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.9e-87 326.2 337 50.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.0e-87 325.5 336 49.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 5.0e-87 325.5 262 57.3
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 1.1e-86 324.3 338 48.5
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-86 323.2 313 51.4
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.1e-85 320.1 318 50.9
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.1e-85 320.1 332 47.3
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 2.8e-85 319.7 338 51.8
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.8e-85 319.7 336 48.5
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 6.1e-85 318.5 325 52.6
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.0e-84 317.8 323 50.5
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.2e-83 314.3 336 47.6
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 4.4e-83 312.4 336 47.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 5.8e-83 312.0 334 50.3
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.1e-81 307.8 327 49.2
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-81 307.4 276 55.8
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 3.2e-81 306.2 345 48.7
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 1.2e-80 304.3 327 48.9
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.0e-80 302.0 220 65.0
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 5.0e-79 298.9 341 43.4
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 6.6e-79 298.5 325 46.5
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 6.6e-79 298.5 330 46.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 2.1e-77 293.5 338 46.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 2.3e-76 290.0 397 42.6
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 7.5e-75 285.0 253 54.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-74 284.3 326 46.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.2e-74 283.5 329 45.3
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-74 282.3 329 45.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 4.9e-74 282.3 329 45.0
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.1e-73 281.2 189 68.8
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 4.6e-72 275.8 281 50.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 8.6e-71 271.6 177 70.6
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.1e-70 271.2 190 66.3
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.2e-69 267.7 312 41.7
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.6e-69 267.3 331 43.5
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.6e-69 267.3 331 43.5
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 2.8e-69 266.5 275 51.3
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 6.2e-69 265.4 267 48.3
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.2e-67 261.2 190 65.3
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.2e-67 261.2 182 69.2
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-67 260.4 189 63.0
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.2e-64 251.1 311 43.1
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.8e-61 240.0 189 57.1
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 6.0e-56 222.2 336 36.3
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.1e-54 218.0 190 54.2
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 1.2e-51 208.0 215 50.2
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-51 207.6 184 53.3
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.6e-48 197.6 233 43.8
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 2.5e-46 190.3 127 72.4
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 5.4e-41 172.6 300 32.7
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 2.8e-37 160.2 164 47.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.9e-33 147.5 172 44.2
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 4.3e-30 136.3 104 62.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 4.3e-30 136.3 336 32.7
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 9.6e-30 135.2 92 66.3
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 6.2e-29 132.5 161 47.8
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 6.2e-29 132.5 95 65.3
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 4.0e-28 129.8 173 42.2
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 9.0e-28 128.6 89 67.4
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-22 111.7 75 70.7
SMO351G0034 Selaginella moellendorffii HOM05D003755 ORTHO05D376906 6.5e-18 95.9 304 27.6
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.2e-16 91.7 81 51.9
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 3.6e-16 90.1 80 52.5
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 7.9e-16 89.0 75 57.3
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 5.1e-15 86.3 76 50.0
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 6.3e-13 79.3 48 77.1
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 6.9e-12 75.9 57 56.1
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 6.5e-10 69.3 74 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 3.6e-08 63.5 69 43.5
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 1.5e-06 58.2 52 48.1
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 5.7e-06 56.2 57 47.4


User provided reference genes

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