Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0109G024 Amborella trichopoda HOM05D007444 ORTHO05D009359 2.9e-100 368.6 191 100.0
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 6.5e-20 101.7 199 36.7
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 4.2e-19 99.0 175 37.1
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 1.6e-18 97.1 109 47.7
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 1.8e-17 93.6 138 42.8
CDE05G3416 Ceratophyllum demersum HOM05D007444 ORTHO05D009359 2.0e-16 90.1 194 36.1
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 2.6e-16 89.7 175 34.9
HPP92_005228 Vanilla planifolia HOM05D007444 ORTHO05D009359 1.3e-15 87.4 204 35.8
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 1.7e-15 87.0 119 37.0
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 1.7e-15 87.0 189 32.8
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 1.1e-14 84.3 201 33.8
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 2.4e-14 83.2 191 34.6
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 2.4e-14 83.2 116 37.9
Dinv37906 Davidia involucrata HOM05D007444 ORTHO05D009359 9.1e-14 81.3 145 37.9
SalBow7G2527 Salvia bowleyana HOM05D007444 ORTHO05D009359 9.1e-14 81.3 189 33.9
Rhsim12G0206600 Rhododendron simsii HOM05D007444 ORTHO05D009359 3.5e-13 79.3 192 32.8
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 7.7e-13 78.2 126 34.1
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 1.3e-12 77.4 124 39.5
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.7e-12 77.0 131 38.2
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 2.9e-12 76.3 131 36.6
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 3.8e-12 75.9 114 36.8
EL10Ac7g16359 Beta vulgaris HOM05D007444 ORTHO05D009359 6.5e-12 75.1 120 35.8
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 6.5e-12 75.1 131 38.2
AUR62038156 Chenopodium quinoa HOM05D007444 ORTHO05D009359 8.5e-12 74.7 191 34.0
PGR119G0376 Punica granatum HOM05D007444 ORTHO05D009359 8.5e-12 74.7 110 41.8
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 1.1e-11 74.3 122 39.3
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 1.1e-11 74.3 132 34.8
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.5e-11 73.9 132 37.9
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 1.9e-11 73.6 189 31.7
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 1.9e-11 73.6 191 35.1
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 2.5e-11 73.2 193 33.7
COL.COLO4_30661 Corchorus olitorius HOM05D007444 ORTHO05D009359 4.2e-11 72.4 114 36.8
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 5.5e-11 72.0 115 36.5
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 7.2e-11 71.6 111 38.7
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 9.4e-11 71.2 135 35.6
Sabra01G0143200 Salix brachista HOM05D007444 ORTHO05D009359 9.4e-11 71.2 128 37.5
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 9.4e-11 71.2 140 35.7
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 9.4e-11 71.2 140 35.7
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 1.2e-10 70.9 110 36.4
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 1.6e-10 70.5 191 31.9
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 2.1e-10 70.1 130 35.4
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 2.1e-10 70.1 133 37.6
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 2.1e-10 70.1 109 38.5
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 2.7e-10 69.7 135 34.8
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 2.7e-10 69.7 110 35.5
BcaB06g25436 Brassica carinata HOM05D007444 ORTHO05D009359 3.6e-10 69.3 112 38.4
C05p54050 Brassica napus HOM05D007444 ORTHO05D009359 3.6e-10 69.3 112 38.4
BolC5t34070H Brassica oleracea HOM05D007444 ORTHO05D009359 3.6e-10 69.3 112 38.4
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 3.6e-10 69.3 122 36.9
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 3.6e-10 69.3 189 30.2
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 4.7e-10 68.9 129 34.9
THA.LOC104815643 Tarenaya hassleriana HOM05D007444 ORTHO05D009359 4.7e-10 68.9 113 38.1
Sp3g11980 Schrenkiella parvula HOM05D007444 ORTHO05D009359 6.1e-10 68.6 114 36.0
Gohir.A06G190400 Gossypium hirsutum HOM05D007444 ORTHO05D009359 8.0e-10 68.2 131 35.9
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 8.0e-10 68.2 121 33.1
CARHR088510 Cardamine hirsuta HOM05D007444 ORTHO05D009359 1.0e-09 67.8 129 34.1
Gorai.010G231700 Gossypium raimondii HOM05D007444 ORTHO05D009359 1.0e-09 67.8 127 37.8
BraA05t22371Z Brassica rapa HOM05D007444 ORTHO05D009359 1.4e-09 67.4 111 37.8
Peaxi162Scf00207g00133 Petunia axillaris HOM05D007444 ORTHO05D009359 1.8e-09 67.0 189 30.2
A05p35640 Brassica napus HOM05D007444 ORTHO05D009359 2.3e-09 66.6 109 35.8
Thhalv10021210m.g Eutrema salsugineum HOM05D007444 ORTHO05D009359 2.3e-09 66.6 113 35.4
SEGI_13370 Sequoiadendron giganteum HOM05D007444 ORTHO05D009359 2.3e-09 66.6 180 30.6
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 2.3e-09 66.6 108 36.1
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 3.0e-09 66.2 108 31.5
Solyc06g062700.3 Solanum lycopersicum HOM05D007444 ORTHO05D009359 3.0e-09 66.2 134 29.9
arahy.Tifrunner.gnm1.ann1.F397YD Arachis hypogaea HOM05D007444 ORTHO05D009359 4.0e-09 65.9 108 35.2
CANSAT56G0761 Cannabis sativa HOM05D007444 ORTHO05D009359 5.2e-09 65.5 126 34.1
Carub.0003s1330 Capsella rubella HOM05D007444 ORTHO05D009359 5.2e-09 65.5 135 34.1
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 5.2e-09 65.5 124 33.9
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 5.2e-09 65.5 167 32.9
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 6.8e-09 65.1 111 36.0
arahy.Tifrunner.gnm1.ann1.ZV36U3 Arachis hypogaea HOM05D007444 ORTHO05D009359 8.8e-09 64.7 108 35.2
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 8.8e-09 64.7 190 30.0
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 1.2e-08 64.3 137 36.5
Pp3c14_13390 Physcomitrium patens HOM05D007444 ORTHO05D009359 1.2e-08 64.3 114 36.8
PGSC0003DMG400004847 Solanum tuberosum HOM05D007444 ORTHO05D009359 1.2e-08 64.3 134 30.6
Aa31LG8G960 Aethionema arabicum HOM05D007444 ORTHO05D009359 1.5e-08 63.9 110 35.5
Migut.D00964 Erythranthe guttata HOM05D007444 ORTHO05D009359 1.5e-08 63.9 161 31.1
Sopen06g022180 Solanum pennellii HOM05D007444 ORTHO05D009359 2.6e-08 63.2 134 29.1
CAN.G825.32 Capsicum annuum HOM05D007444 ORTHO05D009359 4.4e-08 62.4 135 32.6
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 5.7e-08 62.0 121 33.9
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 1.7e-07 60.5 120 35.8
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 3.7e-07 59.3 91 42.9
AT3G13780 Arabidopsis thaliana HOM05D007444 ORTHO05D009359 4.8e-07 58.9 131 31.3
Zm00001eb277400 Zea mays HOM05D007444 ORTHO05D009359 4.8e-07 58.9 144 36.1
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 6.3e-07 58.5 128 32.8
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 1.4e-06 57.4 129 33.3
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 1.8e-06 57.0 91 40.7


User provided reference genes

Program Settings