Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 5.5e-68 260.8 125 100.0
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 81.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 82.5
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 2.8e-56 221.9 126 81.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 4.8e-56 221.1 126 81.7
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 4.8e-56 221.1 126 81.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.3e-56 220.7 126 81.7
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 6.3e-56 220.7 126 81.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 8.2e-56 220.3 126 81.7
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 8.2e-56 220.3 126 81.0
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.0
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 80.2
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 82.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.8e-55 219.2 127 82.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.4e-55 218.8 127 82.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 3.1e-55 218.4 125 80.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 4.1e-55 218.0 125 79.2
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 5.3e-55 217.6 126 80.2
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 5.3e-55 217.6 126 79.4
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 5.3e-55 217.6 126 79.4
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 81.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 80.2
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 80.2
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 81.0
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 9.1e-55 216.9 126 78.6
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.1e-55 216.9 125 80.8
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.0
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 80.2
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 80.2
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 79.4
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.0e-54 215.7 126 79.4
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 79.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 78.6
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 80.2
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 3.5e-54 214.9 125 79.2
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 79.4
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 4.5e-54 214.5 126 79.4
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.5e-54 214.5 125 79.2
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.5e-54 214.5 125 79.2
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.5e-54 214.5 126 79.4
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 5.9e-54 214.2 126 78.6
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.9e-54 214.2 126 79.4
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 7.7e-54 213.8 126 78.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 7.7e-54 213.8 126 78.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 7.7e-54 213.8 126 78.6
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 7.7e-54 213.8 124 80.6
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 7.7e-54 213.8 126 78.6
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 7.7e-54 213.8 126 79.4
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 78.6
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 78.6
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 77.8
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 77.8
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 80.2
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 80.2
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.3e-53 213.0 124 79.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 78.6
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.7e-53 212.6 126 80.2
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.7e-53 212.6 125 78.4
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.2e-53 212.2 126 77.8
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.9e-53 211.8 124 78.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.9e-53 211.8 126 77.8
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.9e-53 211.8 126 77.8
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 3.8e-53 211.5 140 73.6
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 6.5e-53 210.7 126 78.6
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.5e-53 210.7 126 77.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.5e-53 210.7 126 77.0
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.5e-53 210.7 126 78.6
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.5e-53 210.7 126 79.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 8.5e-53 210.3 126 78.6
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 8.5e-53 210.3 126 77.8
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 77.8
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.1e-52 209.9 126 77.8
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 76.2
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 77.8
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 77.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 76.2
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.9e-52 209.1 126 76.2
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 76.2
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 77.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.9e-52 209.1 125 78.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.9e-52 209.1 127 80.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.9e-52 209.1 126 77.8
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.2e-52 208.4 126 78.6
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.2e-52 208.4 126 80.2
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 4.2e-52 208.0 126 77.8
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.2e-52 208.0 126 77.8
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 4.2e-52 208.0 127 78.0
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 7.2e-52 207.2 126 76.2
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 7.2e-52 207.2 126 77.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 9.4e-52 206.8 126 78.6
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-51 206.1 125 76.8
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-51 205.7 127 77.2
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.0e-51 203.8 126 77.8
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 8.0e-51 203.8 126 75.4
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.0e-50 203.4 126 74.6
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 76.2
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 76.2
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.0e-50 201.8 114 79.8
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 4.0e-50 201.4 126 75.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.2e-49 199.9 126 76.2
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.2e-49 199.9 126 73.8
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.6e-49 198.7 125 72.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 71.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.7e-48 196.1 125 72.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.8e-47 192.6 124 71.8
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 69.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 7.0e-47 190.7 93 88.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.0e-46 189.1 94 89.4
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.7e-46 188.7 112 76.8
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 5.9e-46 187.6 94 86.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 8.5e-45 183.7 107 79.4
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.1e-44 183.3 107 79.4
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 9.4e-44 180.3 107 78.5
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 6.1e-43 177.6 107 77.6
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 8.0e-43 177.2 107 78.5
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.0e-42 176.8 107 77.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.4e-42 176.4 107 77.6
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.8e-42 176.0 107 75.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.0e-42 175.3 112 73.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 5.2e-42 174.5 107 76.6
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.2e-41 173.3 107 75.7
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.2e-41 173.3 121 69.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 2.0e-41 172.6 104 76.0
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.4e-41 171.8 112 71.4
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 5.7e-41 171.0 107 73.8
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.2e-40 169.1 107 73.8
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 4.1e-39 164.9 107 72.9
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.3e-36 155.2 139 57.6
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 6.1e-35 151.0 75 86.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.2e-33 146.7 100 64.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.5e-33 146.4 124 60.5
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 2.8e-32 142.1 126 60.3
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.7e-32 141.7 126 57.9
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.4e-31 139.8 141 52.5
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.2e-30 136.7 99 64.6
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.0e-26 123.6 79 69.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 86 55.8
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.4e-23 113.2 65 75.4
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.9e-23 112.8 79 67.1
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 4.1e-23 111.7 66 74.2
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.6e-22 109.8 75 68.0
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.6e-22 109.8 126 47.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.0e-22 107.8 86 60.5
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-20 103.6 86 57.0
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.5e-20 103.2 88 59.1
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 6.8e-18 94.4 75 57.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 3.4e-17 92.0 73 56.2
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 4.4e-17 91.7 94 52.1
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 7.5e-17 90.9 105 47.6
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 9.8e-17 90.5 63 63.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.0e-13 80.5 75 53.3
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.7e-13 79.7 72 52.8
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.1e-12 77.0 43 74.4
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 1.6e-06 56.6 113 35.4


User provided reference genes

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