Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.1e-60 236.5 120 100.0
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 5.2e-23 111.3 79 64.6
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 6.7e-23 110.9 79 64.6
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 2.6e-22 109.0 79 64.6
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 3.3e-22 108.6 79 64.6
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 5.7e-22 107.8 79 63.3
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 7.5e-22 107.5 83 62.7
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.3e-21 106.7 79 63.3
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 1.3e-21 106.7 79 63.3
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 1.7e-21 106.3 83 59.0
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.7e-21 106.3 79 63.3
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.7e-21 106.3 83 60.2
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.7e-21 106.3 79 62.0
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.2e-21 105.9 79 62.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 2.2e-21 105.9 80 62.5
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 2.8e-21 105.5 83 61.4
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.8e-21 105.5 79 63.3
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 3.7e-21 105.1 84 56.0
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 4.8e-21 104.8 79 62.0
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 4.8e-21 104.8 75 64.0
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 4.8e-21 104.8 76 63.2
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 4.8e-21 104.8 83 60.2
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.8e-21 104.8 79 64.6
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 8.3e-21 104.0 79 63.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 8.3e-21 104.0 75 61.3
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 8.3e-21 104.0 79 64.6
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 1.1e-20 103.6 79 60.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 1.1e-20 103.6 84 57.1
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 1.1e-20 103.6 79 62.0
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.4e-20 103.2 75 64.0
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.4e-20 103.2 79 60.8
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.4e-20 103.2 79 60.8
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 59.5
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 62.0
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 62.0
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 58.2
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 60.8
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 58.2
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 60.8
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 2.4e-20 102.4 79 63.3
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 3.1e-20 102.1 79 60.8
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 3.1e-20 102.1 84 56.0
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 3.1e-20 102.1 75 65.3
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 3.1e-20 102.1 111 47.7
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.1e-20 101.7 79 59.5
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 4.1e-20 101.7 112 46.4
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 5.3e-20 101.3 84 57.1
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 5.3e-20 101.3 83 60.2
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 5.3e-20 101.3 83 56.6
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 5.3e-20 101.3 79 62.0
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 5.3e-20 101.3 83 60.2
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 5.3e-20 101.3 83 60.2
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 5.3e-20 101.3 84 56.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 7.0e-20 100.9 79 62.0
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 7.0e-20 100.9 84 57.1
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 7.0e-20 100.9 79 59.5
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 7.0e-20 100.9 79 59.5
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 7.0e-20 100.9 79 59.5
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 9.1e-20 100.5 79 59.5
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.2e-19 100.1 79 60.8
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.2e-19 100.1 79 62.0
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 1.2e-19 100.1 79 62.0
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 1.6e-19 99.8 106 50.9
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.6e-19 99.8 82 56.1
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.6e-19 99.8 76 61.8
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 2.0e-19 99.4 84 53.6
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 2.0e-19 99.4 75 61.3
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.0e-19 99.4 82 59.8
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 2.7e-19 99.0 84 54.8
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 2.7e-19 99.0 79 59.5
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 2.7e-19 99.0 83 55.4
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 2.7e-19 99.0 79 59.5
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 59.5
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 62.0
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 62.0
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 62.0
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 62.0
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 62.0
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 3.5e-19 98.6 79 60.8
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 4.5e-19 98.2 79 59.5
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.5e-19 98.2 79 60.8
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.5e-19 98.2 79 60.8
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 5.9e-19 97.8 83 56.6
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 5.9e-19 97.8 83 56.6
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.0e-18 97.1 79 60.8
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-18 96.7 69 63.8
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.3e-18 96.7 69 63.8
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 1.3e-18 96.7 79 55.7
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.3e-18 96.7 77 58.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 1.7e-18 96.3 82 54.9
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 2.2e-18 95.9 79 59.5
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 2.2e-18 95.9 79 59.5
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.9e-18 95.5 79 59.5
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 2.9e-18 95.5 79 59.5
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 3.8e-18 95.1 77 57.1
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 5.0e-18 94.7 79 58.2
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 8.5e-18 94.0 77 55.8
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 8.5e-18 94.0 83 51.8
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 8.5e-18 94.0 85 52.9
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 1.1e-17 93.6 77 54.5
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 1.1e-17 93.6 77 54.5
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.5e-17 93.2 73 60.3
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.9e-17 92.8 76 60.5
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 3.2e-17 92.0 76 59.2
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.2e-17 92.0 76 59.2
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 3.2e-17 92.0 79 55.7
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.2e-17 91.7 76 57.9
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 4.2e-17 91.7 76 60.5
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 4.2e-17 91.7 76 59.2
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 7.2e-17 90.9 70 57.1
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 1.2e-16 90.1 78 60.3
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.2e-16 90.1 70 55.7
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 2.1e-16 89.4 72 54.2
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 2.7e-16 89.0 74 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 6.1e-16 87.8 70 54.3
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 6.1e-16 87.8 78 57.7
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 6.8e-15 84.3 79 54.4
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 1.5e-14 83.2 77 54.5
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.6e-14 82.4 79 51.9
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 7.5e-14 80.9 74 50.0
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 8.3e-13 77.4 72 48.6
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.4e-12 76.6 105 40.0
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 4.1e-12 75.1 108 42.6
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 9.1e-12 73.9 81 51.9
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 7.7e-11 70.9 50 64.0
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 5.0e-10 68.2 67 53.7
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 2.5e-09 65.9 77 48.1
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.6e-08 63.2 47 63.8
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 2.1e-08 62.8 46 60.9
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 6.1e-08 61.2 42 66.7
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 4.0e-07 58.5 49 59.2
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.5e-06 56.6 41 56.1
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 2.6e-06 55.8 64 45.3


User provided reference genes

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